% MOOSE
% See also: YFeng_2025, YGao_2024, JPaul_2024, Gao_2024
% "The finite element analyses in the present work were conducted using ... (MOOSE) ..."
@Article{Shan_2025,
  author  = {Lily J. Shan and Yuqun Feng and Yuan Gao},
  title   = {Diverging and converging propagation of the polymerization front of cyclooctadiene for tunable front velocity and patterning},
  journal = {The Journal of Physical Chemistry B},
  month   = may,
  year    = 2025,
  volume  = 129,
  number  = 22,
  pages   = {5621--5629},
  note    = {\url{https://doi.org/10.1021/acs.jpcb.5c01387}}
}

% MOOSE
% "... the system of three coupled equations, ... is discretized using the finite element method and implemented in the ... (MOOSE) framework ..."
% See also: Svolos_2022
@Article{Svolos_2025,
  author  = {Lampros Svolos and Quoc-Thai Tran and Ismael D. Boureima and Veronica Anghel and Krishna Garikipati and Hashem M. Mourad},
  title   = {{A phase-field fracture formulation for generalized standard materials: The interplay between thermomechanics and damage}},
  journal = {Journal of the Mechanics and Physics of Solids},
  month   = aug,
  year    = 2025,
  volume  = 201,
  pages   = {106154 (xx pages)},
  note    = {\url{https://doi.org/10.1016/j.jmps.2025.106154}, Tech.~Report LA-UR-24-29912, \url{https://www.osti.gov/biblio/2566435}}
}

% MOOSE/Sockeye
% Note: the preprint has a different title, but the authors are the same and the abstract looks basically identical.
@Article{Hansel_2025,
  author  = {Joshua E. Hansel and Javier Ortensi and Mustafa K. Jaradat},
  title   = {{Studies of the influence of heat pipe model and coupling strategy in heat pipe microreactor simulations using Sockeye}},
  journal = {Annals of Nuclear Energy},
  month   = dec,
  year    = 2025,
  volume  = 224,
  pages   = {111694 (xx pages)},
  note    = {\url{https://doi.org/10.1016/j.anucene.2025.111694}, SSRN Preprint: \url{https://doi.org/10.2139/ssrn.5192216}}
}

% MOOSE/MARMOT
% "To test these hypotheses, we developed a multiscale, mechanistic model ... using ... (MOOSE)-based mesoscale fuel performance code MARMOT ..."
@Article{Simon_2025c,
  author  = {Pierre-Cl{\'{e}}ment A. Simon and Jia-Hong Ke and Chao Jiang and Larry K. Aagesen and Wen Jiang and Stephen Novascone},
  title   = {{Multiscale, mechanistic modeling of cesium transport in silicon carbide for TRISO fuel performance prediction}},
  journal = {npj Computational Materials},
  month   = jul,
  year    = 2025,
  volume  = 11,
  pages   = {238 (13 pages)},
  note    = {\url{https://doi.org/10.1038/s41524-025-01734-y}}
}

% MOOSE/phase_field
@Article{Biswas_2025,
  author  = {Sudipta Biswas and Larry K. Aagesen},
  title   = {{Mesoscale modeling of restructuring in high burnup UO$_2$ fuel}},
  journal = {Computational Materials Science},
  month   = aug,
  year    = 2025,
  volume  = 258,
  pages   = {114052 (xx pages)},
  note    = {\url{https://doi.org/10.1016/j.commatsci.2025.114052}}
}

% MOOSE
% "Equation 2 and the mechanical equilibrium equation were solved in ... MOOSE."
% MOOSE is cited in the "Supporting Information" section of the paper.
@Article{JijieHuang_2025,
  author  = {Jijie Huang and Bin Zhang and Danny Hermawan and Alfredo Sanjuan and Benson Kunhung Tsai and Jialong Huang and R. Edwin Garc{\'{i}}a and Haiyan Wang },
  title   = {Complex oxide-metal hybrid metamaterials with integrated magnetic and plasmonic non-noble metal nanostructures},
  journal = {Advanced Functional Materials},
  month   = jul,
  year    = 2025,
  volume  = 35,
  number  = 30,
  pages   = {2500741 (10 pages)},
  note    = {\url{https://doi.org/10.1002/adfm.202500741}}
}

% MOOSE
% "The entire process model is implemented using MOOSE ... for finite element analysis... "
@Article{Zadeh_2025,
  author  = {Cameron Zadeh and Tatiana Stepanova and Alireza Zarei and Yong Huang and Pauline M. Smith and Gang Li and Srikanth Pilla},
  title   = {{Establishing a process-structure-property-performance framework for SLS additive manufacturing through integrated multiscale modeling}},
  journal = {Materials \& Design},
  month   = sep,
  year    = 2025,
  volume  = 257,
  pages   = {114431 (21 pages)},
  note    = {\url{https://doi.org/10.1016/j.matdes.2025.114431}}
}

% MOOSE
% The entire framework has been implemented using the MOOSE ... library ..."
@Article{Kebria_2025,
  author  = {Mahyar Malekzade Kebria and SeonHong Na and Susan Tighe},
  title   = {{Thermo-hydro-mechanics of thawing permafrost: A phase-field framework with enriched modified Cam-Clay plasticity}},
  journal = {Acta Geotechnica},
  month   = aug,
  year    = 2025,
  volume  = 20,
  number  = 8,
  pages   = {4329--4354},
  note    = {\url{https://doi.org/10.1007/s11440-025-02684-x}}
}

% MOOSE/BISON
@Article{Gamble_2025,
  author  = {Kyle A. Gamble and Aysenur Toptan and Pierre-Cl{\'{e}}ment A. Simon and Daniel J. {van Wasshenova} and Jason D. Hales},
  title   = {{Enabling BWR fuel rod analysis in the BISON fuel performance code}},
  journal = {Journal of Nuclear Materials},
  month   = oct,
  year    = 2025,
  volume  = 616,
  pages   = {156038 (xx pages)},
  note    = {\url{https://doi.org/10.1016/j.jnucmat.2025.156038}}
}

% MOOSE
% "... a phase-field model was developed using ... (MOOSE) to analyze the effects of porosity and sodium infiltration ..."
@Article{WJung_2025,
  author  = {Woojin Jung and Ju-Seong Kim and Kunok Chang},
  title   = {{Investigating constituent redistribution in U-Zr metallic fuels: A phase-field approach incorporating porosity and sodium infiltration}},
  journal = {Annals of Nuclear Energy},
  month   = dec,
  year    = 2025,
  volume  = 224,
  pages   = {111679 (xx pages)},
  note    = {\url{https://doi.org/10.1016/j.anucene.2025.111679}}
}

% MOOSE
% "... developed a computational model using the ... (MOOSE) framework, ... Ray Tracing and Heat conduction modules were used to evaluate the temperature distribution ..."
@Article{Machado_2025b,
  author  = {Luiz C. {Aldeia Machado} and Victor Coppo Leite and Elia Merzari and Roberto Ponciroli and Pramatha Bhat and Lesley M. Wright and Lander Ibarra and Yassin Hassan},
  title   = {Temperature field reconstruction of surfaces heated through radiative heat transfer using convolutional neural networks},
  journal = {ASME Journal of Heat and Mass Transfer},
  month   = sep,
  year    = 2025,
  volume  = 147,
  number  = 9,
  pages   = {092801 (12 pages)},
  note    = {Paper No: HT-24-1402, \url{https://doi.org/10.1115/1.4068750}, first appeared in Proceedings of the ASME 2024 Heat Transfer Summer Conference, July 15--17, 2024, Anaheim, California, \url{https://doi.org/10.1115/HT2024-130465}}
}

% MOOSE
% "The non-isothermal phase-field model with nanoparticle tracing subroutine is numerically implemented using the finite element method within the program NIsoS, developed by the authors based on the MOOSE framework..."
@Article{Bharech_2025,
  author  = {Somnath Bharech and Yangyiwei Yang and Timileyin Oyedeji David and Prasanth Bondi and Mareen Go{\ss}ling and Bilal G{\"{o}}kce and Bai-Xiang Xu},
  title   = {{Laser additive manufacturing of oxide-dispersion-strengthened steels: A simulation-based comparison between powder bed fusion and direct energy deposition}},
  journal = {Advanced Engineering Materials},
  month   = jul,
  year    = 2025,
  volume  = 27,
  number  = 14,
  pages   = {2402946 (14 pages)},
  note    = {Special Issue: Materials for Additive Manufacturing, \url{https://doi.org/10.1002/adem.202402946}}
}

% MOOSE
% "We have implemented these equations in the ... (MOOSE) framework, ..."
@Article{Chatterjee_2025,
  author  = {Sourav Chatterjee and Michael Tonks and William Gardner and Marina Sessim},
  title   = {A diffuse-interface model for predicting the evolution of metallic negative electrodes and interfacial voids in solid-state batteries with homogeneous and polycrystalline solid electrolyte separators},
  journal = {Journal of The Electrochemical Society},
  month   = jul,
  year    = 2025,
  volume  = 172,
  number  = 7,
  pages   = {070522 (xx pages)},
  note    = {\url{https://doi.org/10.1149/1945-7111/aded38}, ArXiv e-print: \url{https://arxiv.org/abs/2412.17147}}
}

% libMesh
% The paper is in Chinese, but I got the following out of Google Translate:
% "This paper uses libMesh to develop a finite element solver for the neutron diffusion equation..."
% https://hdlgc.xml-journal.net/en/article/doi/10.13832/j.jnpe.2025.S1.0021
@Article{FChao_2025,
  author  = {Fang Chao and Li Qing and Peng Xingjie and Zhao Wenbo and Liu Kun and Chen Zhang and Wang Lianjie},
  title   = {Research on the iterative method for solving neutron diffusion equation},
  journal = {Nuclear Power Engineering},
  month   = jul,
  year    = 2025,
  volume  = 46,
  number  = {S1},
  pages   = {21--25},
  note    = {\url{https://doi.org/10.13832/j.jnpe.2025.S1.0021}}
}

% MOOSE
% "All simulations were implemented using ... (MOOSE) ..."
@Article{Nezdyur_2025,
  author  = {Max Nezdyur and John Dolbow and Dennis Onyeka Frank-Ito and Wilkins Aquino},
  title   = {{Embedded FEM with strongly-enforced interface conditions for incompressible flow with moving boundaries}},
  journal = {Computer Methods in Applied Mechanics and Engineering},
  month   = oct,
  year    = 2025,
  volume  = 445,
  pages   = {118197 (xx pages)},
  note    = {\url{https://doi.org/10.1016/j.cma.2025.118197}}
}

% MOOSE
% "In this paper, the physical dataset is generated by solving the systems of PDEs utilising ... (Permann et al. 2020...)"
% https://www.researchgate.net/publication/387273947_Interpretable_Solutions_for_Multi-Physics_PDEs_Using_T-NNGP
% Vol. 39 No. 13: AAAI-25 Technical Tracks 13
@InProceedings{Cao_2025,
  author    = {Lulu Cao and Zexin Lin and Kay Chen Tan and Min Jiang},
  title     = {{Interpretable solutions for multi-physics PDEs using T-NNGP}},
  booktitle = {{Proceedings of the AAAI Conference on Artificial Intelligence (AAAI-25)}},
  address   = {Philadelphia, Pennsylvania},
  pages     = {14212--14220},
  volume    = 39,
  number    = 13,
  publisher = {Association for the Advancement of Artificial Intelligence},
  month     = feb # {~25--} # mar # {~4,},
  year      = 2025,
  note      = {\url{https://doi.org/10.1609/aaai.v39i13.33556}, ResearchGate Preprint: \url{https://tinyurl.com/ycx8avc9}}
}

% MOOSE
% https://link.aps.org/pdf/10.1103/v27k-y5fb
% "The finite element method in ... (MOOSE) is used to perform the simulations..."
@Article{Leibengood_2025,
  author  = {Tyler J. Leibengood and Pierre-Cl{\'{e}}ment A. Simon and P. Graham Pritchard and James M. Rondinelli and Peter W. Voorhees},
  title   = {Niobium hydride formation in superconducting qubit thin films},
  journal = {Physical Review Materials},
  month   = jul,
  year    = 2025,
  volume  = 9,
  number  = 7,
  pages   = {074803 (15 pages)},
  note    = {\url{https://doi.org/10.1103/v27k-y5fb}}
}

% MOOSE
@Article{Harbour_2025,
  author  = {Logan Harbour and Guillaume Giudicelli and Alexander D. Lindsay and Peter German and Joshua Hansel and Casey Icenhour and Mengnan Li and Jason M. Miller and Roy H. Stogner and Patrick Behne and Daniel Yankura and Zachary M. Prince and Corey DeChant and Daniel Schwen and Benjamin W. Spencer and Mauricio Tano and Namjae Choi and Yaqi Wang and Max Nezdyur and Yinbin Miao and Tianchen Hu and Shikhar Kumar and Christopher Matthews and Brandon Langley and Nuno Nobre and Alexander Blair and Chris MacMackin and Henrique Bergallo Rocha and Edward Palmer and Jesse Carter and J{\"{o}}rg Meier and Andrew E. Slaughter and David Andr{\v{s}} and Robert W. Carlsen and Fande Kong and Derek R. Gaston and Cody J. Permann},
  title   = {{4.0 MOOSE: Enabling massively parallel multiphysics simulation}},
  journal = {SoftwareX},
  month   = sep,
  year    = 2025,
  volume  = 31,
  pages   = {102264 (4 pages)},
  note    = {\url{https://doi.org/10.1016/j.softx.2025.102264}}
}

% MOOSE/BISON
% "The training, validation, and testing datasets were generated through coupled simulations involving BISON, ..."
% author:machado author:leite machine-learning-aided
@Misc{Machado_2025,
  author       = {Luiz Aldeia Machado and Victor Coppo Leite and Elia Merzari and Arthur Motta and Roberto Ponciroli and Lander Ibarra and Lise Charlot},
  title        = {Toward developing machine-learning-aided tools for the thermomechanical monitoring of nuclear reactor components},
  month        = jul,
  year         = 2025,
  howpublished = {ArXiv e-print},
  note         = {\url{https://arxiv.org/abs/2507.09443}}
}

% MOOSE
% "Moreover, the CPFE simulations are performed under the open-source MOOSE framework..."
@Article{ZZhang_2025,
  author  = {Zhenhua Zhang and Zixu Guo and Quanquan Han and Daijun Hu and Shiwei Wu and Haiyang Fan and Erlei Li and Ming Li and Yilun Xu and Shoufeng Yang and Chuanzhen Huang and Wentao Yan},
  title   = {{Anomalous anisotropy in an additively manufactured solid-solution-strengthened superalloy from room to elevated temperatures}},
  journal = {International Journal of Plasticity},
  month   = sep,
  year    = 2025,
  volume  = 192,
  pages   = {104409 (27 pages)},
  note    = {\url{https://doi.org/10.1016/j.ijplas.2025.104409}}
}

% MOOSE
% "Our previously developed MOOSE ... application can regularize noisy surface representations."
% The issue number was not yet known when I first found this.
@Article{CJHuang_2025,
  author  = {Chen-Jui Huang and Jin An Sam Oh and Marta Vicencio and Tianchen Hu and Hedi Yang and James N. Burrow and Yen-Fang Song and Gung-Chian Yin and Pavel Shevchenko and Kamila M. Wiaderek and Bing Joe Hwang and Ying Shirley Meng},
  title   = {X-ray micro-computed tomography for structural analysis of all-solid-state battery at pouch cell level},
  journal = {ACS Energy Letters},
  month   = jul,
  year    = 2025,
  volume  = 10,
  number  = 7,
  pages   = {3459--3470},
  note    = {\url{https://doi.org/10.1021/acsenergylett.5c00956}, Special Issue: ``The Evolving Landscape of Energy Research: Views from the Editorial Team''}
}

% MOOSE
% "Each test specimen was modeled by two independent analysts using MOOSE ... and ANSYS ..."
% DOI was not yet live when I first found this article.
% https://www.sciencedirect.com/science/article/pii/S0029549325004613
@Article{Reneau_2025,
  author  = {Andrea Mack Reneau and William Hoffman and Nancy Lybeck and William Windes},
  title   = {{Evaluating design safety margins in the American Society of Mechanical Engineers graphite core components design-by-analysis assessments}},
  journal = {Nuclear Engineering and Design},
  month   = nov,
  year    = 2025,
  volume  = 443,
  pages   = {114284 (13 pages)},
  note    = {\url{https://doi.org/10.1016/j.nucengdes.2025.114284}}
}

% MOOSE
% "The developed multi-physics model is implemented in the MOOSE platform for finite-element simulations."
% author:chen author:carrillo author:maji deciphering interplay
@Misc{WXChen_2025,
  author       = {Wan-Xin Chen and Luis J. Carrillo and Arnab Maji and Xiang-Long Peng and Joseph Handy and Sarbajit Banerjee and Bai-Xiang Xu},
  title        = {Deciphering the interplay between wetting and chemo-mechanical fracture in lithium-ion battery cathode materials},
  month        = jul,
  year         = 2025,
  howpublished = {ArXiv e-print},
  note         = {\url{https://arxiv.org/abs/2507.04574}}
}

% MOOSE/Cardinal
% "... a model of the MSFR is developed in the multiphysics code Cardinal, ..."
@InProceedings{Dalinger_2025b,
  author    = {Maximiliano Dalinger and Elia Merzari and Saya Lee and Casey Emler},
  title     = {{High-fidelity modelling of the Molten Salt Fast Reactor}},
  booktitle = {{Proceedings of the 21st International Topical Meeting on Nuclear Reactor Thermal Hydraulics (NURETH-21)}},
  address   = {Busan, Korea},
  month     = aug # {~31--} # sep # {~5,},
  year      = 2025,
  note      = {ArXiv e-print: \url{https://arxiv.org/abs/2507.04129}}
}

% MOOSE
% "This approach to modeling the cladding process ... has been implemented in ... (MOOSE), now accessible through the MALAMUTE application."
% Only the review draft PDF was available when I initially found this.
@Article{Darabi_2025c,
  author  = {Roya Darabi and Jorge Wolfs Gil and Erfan Azinpour and Jo{\~{a}}o Sousa and Ana Reis and Jos{\'{e}} C{\'{e}}sar {de S{\'{a}}}},
  title   = {{Controlling hot cracking in WC--NiCrBSiFe coatings produced by laser surface cladding: A multiphase field approach for enhancing process repeatability}},
  journal = {Journal of the Mechanics and Physics of Solids},
  month   = oct,
  year    = 2025,
  volume  = 203,
  pages   = {106238 (xx pages)},
  note    = {\url{https://doi.org/10.1016/j.jmps.2025.106238}}
}

% MOOSE
% "The geomechanical simulations are again performed using the Solid Mechanics module of the MOOSE software."
@Article{Delpierre_2025,
  author  = {Nathan Delpierre and Hadrien Rattez and Sandra Soares-Fraz{\~{a}}o},
  title   = {Surface-subsurface flow effect on earthen dikes geomechanical stability during overtopping event},
  journal = {Geomechanics for Energy and the Environment},
  month   = sep,
  year    = 2025,
  volume  = 43,
  pages   = {100709 (xx pages)},
  note    = {\url{https://doi.org/10.1016/j.gete.2025.100709}}
}

% MOOSE
% "This work explores a computational fluid dynamics approach for butterfly valve performance factors using the open-source ... (MOOSE) framework."
@Article{Yankura_2025,
  author  = {Daniel Yankura and Matthew Anderson},
  title   = {{Butterfly valve performance factors using the Multiphysics Object Oriented Simulation Environment}},
  journal = {Annals of Nuclear Energy},
  month   = dec,
  year    = 2025,
  volume  = 224,
  pages   = {111671 (8 pages)},
  note    = {\url{https://doi.org/10.1016/j.anucene.2025.111671}}
}

% MOOSE
% "... the present work uses a much higher-fidelity MOOSE ... model ..."
@Article{Tunkle_2025,
  author  = {Leo Tunkle and Kamal Abdulraheem and Linyu Lin and Majdi I. Radaideh},
  title   = {Nuclear microreactor transient and load-following control with deep reinforcement learning},
  journal = {Energy Conversion and Management: X},
  month   = jul,
  year    = 2025,
  volume  = 27,
  pages   = {101090 (32 pages)},
  note    = {\url{https://doi.org/10.1016/j.ecmx.2025.101090}, ArXiv e-print: \url{https://arxiv.org/abs/2504.00156}}
}

% MOOSE
@Article{Martin_2025,
  author  = {Nicolas Martin and Lise Charlot and Gerhard Strydom},
  title   = {{A MOOSE-based model for fission product transport and source term estimation for high-temperature gas-cooled reactors}},
  journal = {Nuclear Technology},
  month   = aug,
  year    = 2025,
  volume  = 211,
  number  = 8,
  pages   = {1674--1698},
  note    = {\url{https://doi.org/10.1080/00295450.2024.2425916}}
}

% MOOSE
% "We implement the model in ... MOOSE ..."
% author:zhang author:lai alloying electrodes cracks and pores
@Misc{DZhang_2025,
  author       = {Delin Zhang and Yu-Cheng Lai and Kodi Thurber and Kai Smith and Johanna N. Weker and Sarah Tolbert and Ananya Renuka Balakrishna},
  title        = {{Modeling finite deformations in alloying electrodes -- A closer look at cracks and pores during phase transformation}},
  month        = jun,
  year         = 2025,
  howpublished = {ArXiv e-print},
  note         = {\url{https://arxiv.org/abs/2506.19982}}
}

% MOOSE
% "Order parameter ... is computed by ... solving Equations 6 and 7 with ... (MOOSE) ..."
% author:sevic author:juston morphologically self-consistent memristive
@Misc{Sevic_2025,
  author       = {John F. Sevic and Ambroise Juston and Nobuhiko P. Kobayashi},
  title        = {A morphologically self-consistent phase field model for the computational study of memristive thin film current-voltage hysteresis},
  month        = jun,
  year         = 2025,
  howpublished = {ArXiv e-print},
  note         = {\url{https://arxiv.org/abs/2506.17421}}
}

% MOOSE/SAM
% "The LOF scenario for the ABTR was first analyzed using the 1-D module of the System Analysis Module (SAM)."
@Article{Abulawi_2025,
  author  = {Zaid Abulawi and Rui Hu and Prasanna Balaprakash and Yang Liu},
  title   = {{Bayesian optimized deep ensemble for uncertainty quantification of deep neural networks: A system safety case study on sodium fast reactor thermal stratification modeling}},
  journal = {Reliability Engineering \& System Safety},
  month   = dec,
  year    = 2025,
  volume  = {264, Part A},
  pages   = {111353 (xx pages)},
  note    = {\url{https://doi.org/10.1016/j.ress.2025.111353}, ArXiv e-print: \url{https://doi.org/10.48550/arXiv.2412.08776}}
}

% MOOSE/GOLEM
% "This software is based on the finite-element solver MOOSE ..."
% "The numerical forward simulations are performed in GOLEM ... which is ... based on the MOOSE framework ..."
@Article{Degen_2025,
  author  = {Denise Degen and Moritz Ziegler and Oliver Heidbach and Andreas Henk and Karsten Reiter and Florian Wellmann},
  title   = {{About the trustworthiness of physics-based machine learning --- considerations for geomechanical applications}},
  journal = {Solid Earth},
  month   = jun,
  year    = 2025,
  volume  = 16,
  number  = 6,
  pages   = {477--502},
  note    = {\url{https://doi.org/10.5194/se-16-477-2025}, EGUsphere Preprint: \url{https://doi.org/10.5194/egusphere-2024-2932}}
}

% MOOSE
% This conference paper does not specifically say that they use MOOSE, but this group from Beck Engineering
% has published other conference papers where they mention having a simulation tool based on MOOSE, see e.g. TChung_2024.
% https://www.researchgate.net/publication/392814287_Hydromechanical_Simulation_of_Post-Mining_Flooding_and_Associated_Seismicity
@InProceedings{Dehkhoda_2025,
  author    = {Sevda Dehkhoda and Traiwit Chung and Arnd Flatten and Vladislav Levkovitch},
  title     = {Hydromechanical simulation of post-mining flooding and associated seismicity},
  booktitle = {{Proceedings of Eurock 2025}},
  address   = {Trondheim, Norway},
  month     = jun # {~16--20,},
  year      = 2025,
  note      = {\url{https://tinyurl.com/4jaxz6bt}}
}

% MOOSE
% "... we developed new multiphysics fusion blanket simulation capabilities in ... (MOOSE). "
@Article{Franklin_2025,
  author  = {Trevor Franklin and Casey Icenhour and Pierre-Cl{\'{e}}ment A. Simon and Paul Humrickhouse and Fande Kong and Lane B. Carasik},
  title   = {{New developments and verification of fusion blanket simulation capabilities in the MOOSE framework}},
  journal = {Fusion Engineering and Design},
  month   = sep,
  year    = 2025,
  volume  = 218,
  pages   = {115128 (xx pages)},
  note    = {\url{https://doi.org/10.1016/j.fusengdes.2025.115128}}
}

% MOOSE
% "The simulation methodology employed in this work integrates a coupled model ... within the MOOSE ... framework."
@Article{Rezwan_2025,
  author  = {Aashique A. Rezwan and Nicole K. Aragon and David Montes {de Oca Zapiain} and Hojun Lim},
  title   = {{Coupled phase field damage and crystal plasticity analysis of intragranular fracture: The role of crystallographic orientation and voids}},
  journal = {International Journal of Plasticity},
  month   = aug,
  year    = 2025,
  volume  = 191,
  pages   = {104372 (xx pages)},
  note    = {\url{https://doi.org/10.1016/j.ijplas.2025.104372}}
}

% MOOSE/BlackBear
% "... these models were implemented in BlackBear ... which is a code based on ... (MOOSE) ..."
@Article{Jain_2025,
  author  = {Amit Jain and Benjamin W. Spencer and Albert Dahal and Sudipta Biswas and Somayajulu L. N. Dhulipala},
  title   = {Multiphysics simulation of recent experiments on alkali-silica reaction expansion in reinforced concrete members},
  journal = {Structural Concrete},
  month   = jun,
  year    = 2025,
  volume  = 26,
  number  = 3,
  pages   = {2606--2629},
  note    = {\url{https://doi.org/10.1002/suco.202400893}, engr$\chi$iv e-print: \url{https://doi.org/10.31224/3951}}
}

% MOOSE/Felino
% "The presented software framework, Felino, addresses these challenges by building on the ... open-source ... (MOOSE) platform..."
% author:chou author:darabi felino
@Misc{Chou_2025,
  author       = {Daniel T. Chou and Roya Darabi},
  title        = {{Felino: A modular open-access software for high-cycle fatigue simulation via phase-field methods}},
  month        = jun,
  year         = 2025,
  howpublished = {SSRN Preprint},
  note         = {\url{https://doi.org/10.2139/ssrn.5291375}}
}

% MOOSE/GOLEM
% "The method section includes ... the physics-based ATES model developed in MOOSE-GOLEM Framework..."
@Article{Petrova_2025,
  author  = {Elena Petrova and Mauro Cacace and Stefan Kranz and Arno Zang and Guido Bl{\"{o}}cher},
  title   = {{Thermal interference in aquifer thermal energy storage: Insights from stochastic surrogate modelling of well placement}},
  journal = {Applied Thermal Engineering},
  month   = nov,
  year    = 2025,
  volume  = {Volume 278, Part A},
  pages   = {127012 (12 pages)},
  note    = {\url{https://doi.org/10.1016/j.applthermaleng.2025.127012}}
}

% MOOSE/NIsoS
% "The non-isothermal simulator (NIsoS) program based on the MOOSE framework is employed to implement the non-isothermal phase-field model ..."
@Article{Bharech_2025b,
  author  = {Somnath Bharech and Yangyiwei Yang and Michael Selzer and Britta Nestler and Bai-Xiang Xu},
  title   = {{ML-extendable framework for multiphysics-multiscale simulation workflow and data management using Kadi4Mat}},
  journal = {Scientific Data},
  month   = jun,
  year    = 2025,
  volume  = 12,
  pages   = {962 (11 pages)},
  note    = {\url{https://doi.org/10.1038/s41597-025-05027-3}, ArXiv e-print: \url{https://arxiv.org/abs/2407.02162}}
}

% MOOSE
% "The model is implemented using the open-source MOOSE ... framework."
% "The order parameters ... are generated using ... MOOSE ..."
@Article{Kadambi_2025,
  author  = {Sourabh Bhagwan Kadambi and Daniel Schwen and Jia-Hong Ke and Lingfeng He and Andrea M. Jokisaari},
  title   = {{Phase-field modeling of radiation-induced composition redistribution: An application to additively manufactured austenitic Fe-Cr-Ni}},
  journal = {Computational Materials Science},
  month   = jun,
  year    = 2025,
  volume  = 255,
  pages   = {113895 (xx pages)},
  note    = {\url{https://doi.org/10.1016/j.commatsci.2025.113895}, ArXiv e-print: \url{https://arxiv.org/abs/2501.17154}}
}

% MOOSE
% MOOSE is in the title.
@Article{WJi_2025,
  author  = {W. Ji and O. Mur{\'{a}}nsky and M. C. Messner and W. Jiang and T. Hu and M. Smith},
  title   = {{Development, validation, and verification of multi-pass thermo-mechanical welding simulations using the open-source MOOSE framework: NeT TG4 benchmark weldment}},
  journal = {International Journal of Pressure Vessels and Piping},
  month   = dec,
  year    = 2025,
  volume  = {218, Part A},
  pages   = {105560 (20 pages)},
  note    = {\url{https://doi.org/10.1016/j.ijpvp.2025.105560}}
}

% MOOSE
% "High fidelity multi-physics coupling analysis of heat pipe cooling reactor startup was conducted using the MOOSE framework, ..."
@Article{WWang_2025,
  author  = {Weixiang Wang and Kefan Zhang and Sifan Dong and Shuai Wang and Hongli Chen},
  title   = {{Analysis of heat pipe cooled reactor startup characteristics by multi-physics coupling simulation based on MOOSE framework}},
  journal = {Nuclear Engineering and Design},
  month   = sep,
  year    = 2025,
  volume  = 441,
  pages   = {114164 (xx pages)},
  note    = {\url{https://doi.org/10.1016/j.nucengdes.2025.114164}}
}

% libMesh/IBAMR
% "All computations for were completed through IBAMR... IBAMR uses other libraries ... including ... libMesh"
@Article{Facci_2025,
  author  = {Michael J. Facci and Ebrahim M. Kolahdouz and Boyce E. Griffith},
  title   = {{An immersed interface method for incompressible flows and geometries with sharp features}},
  journal = {Journal of Computational Physics},
  month   = sep,
  year    = 2025,
  volume  = 537,
  pages   = {114119 (xx pages)},
  note    = {\url{https://doi.org/10.1016/j.jcp.2025.114119}, ArXiv e-print: \url{https://arxiv.org/abs/2410.16466}}
}

% MOOSE
% See also: SacMorane_2023, SacMorane_2024, SacMorane_2025
@phdthesis{SacMorane_thesis,
  author = {Alexandre Sac-Morane},
  school = {Duke University},
  title  = {{Numerical analysis of chemo-mechanical couplings in geomaterials at the microscale}},
  note   = {\url{https://www.proquest.com/openview/47b89f3c9621d5456dce9cbbea680d2d/1}},
  month  = may,
  year   = 2025
}

% libMesh/IBAMR
% See also: Rossi_2022
@phdthesis{Abdalla_thesis,
  author = {Laryssa Abdala},
  school = {University of North Carolina at Chapel Hill},
  title  = {{Electro-fluid-mechanical computational models of the human heart}},
  note   = {\url{https://www.proquest.com/openview/3cab4b1a6bf09deb78e616a9ccdd9fc7/1}},
  month  = may,
  year   = 2025
}

% MOOSE
% "The model was implemented with finite elements within the ... MOOSE framework ..."
% Submitted to Geophysical Research Letters
% author:van-ginkel temporal variations seismic ambient
@Misc{vanGinkel_2025,
  author       = {Janneke {van Ginkel} and Adrien Wehrl{\'{e}} and Ana Nap and Fabian Walter and Andrea Kneib-Walter and Hugo Rousseau and Martin Luethi},
  title        = {{Temporal variations in seismic ambient noise depict seasonal changes in subglacial hydraulics at Sermeq Kujalleq in Kangia, Greenland}},
  month        = may,
  year         = 2025,
  howpublished = {ESS Open Archive e-print},
  note         = {\url{https://doi.org/10.22541/essoar.174835019.94711780/v1}}
}

% MOOSE
% "We employ a fully coupled Thermo-Hydro-Mechanical (THM) simulation using the MOOSE framework..."
% https://www.researchgate.net/publication/392369194_THERMO-HYDRO-MECHANICAL_ANALYSIS_OF_FAULT_ZONES_FOR_DEEP_ENHANCED_GEOTHERMAL_SYSTEMS_IMPLICATIONS_FOR_RESERVOIR_PERFORMANCE_AND_SEISMIC_STABILITY
@InProceedings{Vadiee_2025b,
  author    = {Saeed Vadiee and Biao Li},
  title     = {{Thermo-hydro-mechanical analysis of fault zones for deep enhanced geothermal systems: Implications for reservoir performance and seismic stability}},
  booktitle = {{23rd Canadian Rock Mechanics Symposium (RockEng 2025)}},
  address   = {Montr{\'{e}}al, Qu{\'{e}}bec, Canada},
  month     = aug # {~17--19,},
  year      = 2025,
  note      = {\url{https://tinyurl.com/4u5jwhb7}}
}

% MOOSE
% "The axisymmetric finite-element simulations based on the reaction-diffusion model are conducted using ... MOOSE ..."
@Article{YunSeongKim_2025,
  author  = {Yun Seong Kim and Minjiang Zhu and Mohammad Tanver Hossain and Derrick Sanders and Rohan Shah and Yuan Gao and Jeffrey S. Moore and Nancy R. Sottos and Randy H. Ewoldt and Philippe H. Geubelle and Sameh H. Tawfick},
  title   = {{Morphogenic Growth 3D Printing}},
  journal = {Advanced Materials},
  month   = may,
  year    = 2025,
  volume  = 37,
  number  = 20,
  pages   = {2406265 (8 pages)},
  note    = {\url{https://doi.org/10.1002/adma.202406265}}
}

% IBAMR/libMesh
% "The 3D CFD simulations to model blood flow were performed using an in-house C++ code based on the libMesh finite element library..."
@Article{Giesbrecht_2025,
  author  = {Kirsten Giesbrecht and Simone Rossi and Sophie Liu and Shourya Mukherjee and Michael Bressan and Boyce E. Griffith},
  title   = {An anatomically informed computational fluid dynamics modeling approach for quantifying hemodynamics in the developing heart},
  journal = {PLOS One},
  month   = may,
  year    = 2025,
  volume  = 20,
  number  = 5,
  pages   = {e0322233 (21 pages)},
  note    = {\url{https://doi.org/10.1371/journal.pone.0322233}}
}

% MOOSE
% "Equations 1 and 3 are solved ... with the open-source finite element software MOOSE..."
@Article{SacMorane_2025,
  author  = {Alexandre Sac-Morane and Hadrien Rattez and Manolis Veveakis},
  title   = {{Importance of precipitation on the slowdown of creep behaviour induced by pressure-solution}},
  journal = {Journal of Engineering Mechanics},
  month   = jul,
  year    = 2025,
  volume  = 151,
  number  = 7,
  pages   = {04025025 (xx pages)},
  note    = {\url{https://doi.org/10.1061/jenmdt.emeng-8360}, ArXiv e-print: \url{https://arxiv.org/abs/2412.01775}}
}

% MOOSE
% "Our model was implemented using the finite element method (FEM) in ... (MOOSE)..."
@Article{Kombaiah_2025,
  author  = {Boopathy Kombaiah and Sriswaroop Dasari and Chaitanya Bhave and Ninad Mohale and Advika Chesetti and Sourabh Bhagwan Kadambi},
  title   = {{Creep-induced elemental redistribution at grain boundaries of 304L stainless steel -- An experimental evidence for diffusional creep mechanisms}},
  journal = {Acta Materialia},
  month   = aug,
  year    = 2025,
  volume  = 294,
  pages   = {121137 (38 pages)},
  note    = {\url{https://doi.org/10.1016/j.actamat.2025.121137}}
}

% MOOSE
% "Data and MOOSE input files will be provided upon request."
@Article{Yadav_2025,
  author  = {Vishal Yadav and Michael Tonks and Jhonathan Rosales},
  title   = {{Impact of microstructural variations on fuel loss in NTP Cermet fuel: A mesoscale simulation study}},
  journal = {Journal of Nuclear Materials},
  month   = aug,
  year    = 2025,
  volume  = 614,
  pages   = {155870 (xx pages)},
  note    = {\url{https://doi.org/10.1016/j.jnucmat.2025.155870}}
}

% MOOSE/BISON
% "Representative simulations were performed on TRISO particles with BISON..."
@Article{Montoya_2025,
  author  = {Katherine I. Montoya and Erik G. Herbert and Danny P. Schappel and Tyler J. Gerczak and Christian M. Petrie and Andrew T. Nelson and Tyler J. Gerczak},
  title   = {{Micromechanical response of SiC-OPyC layers in TRISO fuel particles}},
  journal = {Journal of Nuclear Materials},
  month   = feb,
  year    = 2025,
  volume  = 606,
  pages   = {155654 (11 pages)},
  note    = {\url{https://doi.org/10.1016/j.jnucmat.2025.155654}}
}

% MOOSE/BlackBear
% "The INL team employed a fully coupled multiphysics model, implemented in the BlackBear code..."
% https://www.researchgate.net/publication/391734049_Implications_of_License_Renewal_of_Aging_NPPs_A_Case_Study_on_the_Impact_of_External_Hazards_on_an_Aging_Containment_Building
@InProceedings{Batikh_2025,
  author    = {Akram S. Batikh and Yahya A Alzahrani and Mihai A. Diaconeasa},
  title     = {{Implications of license renewal of aging NPPs: A case study on the impact of external hazards on an aging containment building}},
  booktitle = {{Proceedings of the 19th International Conference on Probabilistic Safety Assessment and Analysis (PSA 2025)}},
  address   = {Chicago, Illinois},
  publisher = {American Nuclear Society},
  month     = jun # {~15--18,},
  year      = 2025,
  note      = {\url{https://tinyurl.com/mr3kk8rh}}
}

% MOOSE/MOSKITO
% "MOSKITO ..., a finite element code developed within the MOOSE framework, has proven to be a powerful tool for this purpose ..."
@InProceedings{Esmaeilpour_2025,
  author    = {Morteza Esmaeilpour and Christopher Schifflechner and Nicolas Rangel Jurado and Tsubasa Onishi and Daniel Pokras and Jasper {de Reus} and Sebastian K{\"{o}}hlert and Martin O. Saar },
  title     = {{A case study of using sCO2 equipment in different geothermal energy systems: AGS, EGS and CPG}},
  booktitle = {{Proceedings of the 6th Edition of the European Conference on Supercritical CO$_2$ (sCO$_2$) for Energy Systems}},
  address   = {Delft, Netherlands},
  pages     = {212--231},
  month     = apr # {~9--11,},
  year      = 2025,
  note      = {\url{https://doi.org/10.17185/duepublico/83331}}
}

% libMesh
% "Our implementation makes intensive use of the libMesh numerical library."
@Article{Marx_2025b,
  author  = {Tobias Marx and Sergey I. Bokarev},
  title   = {{A frequency-domain approach to molecular photoionization via driven Schr{\"{o}}dinger equation}},
  journal = {The Journal of Chemical Physics},
  month   = may,
  year    = 2025,
  volume  = 162,
  number  = 18,
  pages   = {184109 (19 pages)},
  note    = {\url{https://doi.org/10.1063/5.0261100}}
}

% MOOSE
% https://www.researchgate.net/publication/394096147_MOOSE_Web_Server_Interface_A_Message-Based_External_Interface_for_Multiphysics_Simulations
@InProceedings{Harbour_2025b,
  author    = {Logan Harbour and Patrick Shriwise and April Novak and Derek Gaston},
  title     = {{MOOSE web server interface: A message-based external interface for multiphysics simulations}},
  booktitle = {{Proceedings of the International Conference on Mathematics and Computational Methods Applied to Nuclear Science and Engineering (M\&C 2025)}},
  address   = {Denver, Colorado},
  month     = apr # {~27--30,},
  year      = 2025,
  pages     = {1384--1393},
  note      = {\url{https://doi.org/10.13182/xyz-47300}}
}

% MOOSE/BISON
% "A high-fidelity framework coupling the Serpent Monte Carlo (MC) code with MOOSE-based tools was developed..."
% https://www.researchgate.net/publication/391454117_Serpent_-_BISON_-_THM_Preliminary_Multiphysics_Modeling_of_a_Nuclear_Thermal_Propulsion_System_Fuel_Assembly
@InProceedings{Aguirre_2025,
  author    = {Isaac Naupa Aguirre and Stefano Terlizzi and Mark D. DeHart},
  title     = {{Serpent--BISON--THM preliminary multiphysics modeling of a nuclear thermal propulsion system fuel assembly}},
  booktitle = {{Proceedings of the International Conference on Mathematics and Computational Methods Applied to Nuclear Science and Engineering (M\&C 2025)}},
  address   = {Denver, Colorado},
  month     = apr # {~27--30,},
  year      = 2025,
  pages     = {1301--1310},
  note      = {\url{https://tinyurl.com/2s3rfy3k}}
}

% MOOSE
% "... the method of eigenfunction expansion is compared to one calculated using the MOOSE finite element framework ..."
% https://www.researchgate.net/publication/391427057_Method_of_Eigenfunction_Expansion_Applied_to_Laplace's_Equation_in_Problems_Consisting_of_Multilayer_Concentric_Spheres
@InProceedings{Price_2025,
  author    = {Dean Reid Price},
  title     = {{Method of eigenfunction expansion applied to Laplace's equation in problems consisting of multilayer concentric spheres}},
  booktitle = {{Proceedings of the International Conference on Mathematics and Computational Methods Applied to Nuclear Science and Engineering (M\&C 2025)}},
  address   = {Denver, Colorado},
  month     = apr # {~27--30,},
  year      = 2025,
  pages     = {1364--1373},
  note      = {\url{https://tinyurl.com/343uky9v}}
}

% MOOSE
@InProceedings{SKumar_2025,
  author    = {Shikhar Kumar and Logan Harbour and Guillaume Giudicelli and Yinbin Miao and Yeon Sang Jung and Emily Shemon},
  title     = {{Improvements to the MOOSE reactor geometry mesh builder to streamline mesh generation workflows for advanced reactor designs}},
  booktitle = {{Proceedings of the International Conference on Mathematics and Computational Methods Applied to Nuclear Science and Engineering (M\&C 2025)}},
  address   = {Denver, Colorado},
  month     = apr # {~27--30,},
  year      = 2025,
  pages     = {6--15},
  note      = {\url{https://www.ans.org/pubs/proceedings/article-58037/}}
}

% MOOSE/Griffin
@InProceedings{Bevans_2025,
  author    = {Zachary D. Bevans and Javier Ortensi and Scott P. Palmtag},
  title     = {{Neutronics analysis of a lead-cooled fast reactor using Griffin}},
  booktitle = {{Proceedings of the International Conference on Mathematics and Computational Methods Applied to Nuclear Science and Engineering (M\&C 2025)}},
  address   = {Denver, Colorado},
  month     = apr # {~27--30,},
  year      = 2025,
  pages     = {26--35},
  note      = {\url{https://www.ans.org/pubs/proceedings/article-58039/}}
}

% MOOSE/Griffin
@InProceedings{YWang_2025b,
  author    = {Yaqi Wang and Joshua Hanophy and Javier Ortensi and Namjae Choi},
  title     = {{High-fidelity pebble bed reactor depletion based on pebble tracking transport in Griffin}},
  booktitle = {{Proceedings of the International Conference on Mathematics and Computational Methods Applied to Nuclear Science and Engineering (M\&C 2025)}},
  address   = {Denver, Colorado},
  month     = apr # {~27--30,},
  year      = 2025,
  pages     = {262--271},
  note      = {\url{https://www.ans.org/pubs/proceedings/article-58061/}}
}

% MOOSE/Griffin
@InProceedings{Hanophy_2025b,
  author    = {Joshua Hanophy and Paolo Balestra and Rodrigo de Oliveira},
  title     = {{Numerical method improvements in Griffin for pebble bed reactors with a focus on the computation of burnup}},
  booktitle = {{Proceedings of the International Conference on Mathematics and Computational Methods Applied to Nuclear Science and Engineering (M\&C 2025)}},
  address   = {Denver, Colorado},
  month     = apr # {~27--30,},
  year      = 2025,
  pages     = {272--278},
  note      = {\url{https://www.ans.org/pubs/proceedings/article-58062/}}
}

% MOOSE
% "This advanced formulation is implemented using the MOOSE ... framework ..."
@Article{JLee_2025,
  author  = {Jeonghwan Lee and Yulan Li and Shenyang Hu and Kunok Chang},
  title   = {{Nonlinear lattice parameter-concentration relationship and its role in microstructural evolution of alloys}},
  journal = {Physica B: Condensed Matter},
  month   = sep,
  year    = 2025,
  volume  = 713,
  pages   = {417289 (xx pages)},
  note    = {\url{https://doi.org/10.1016/j.physb.2025.417289}}
}

% MOOSE
% "The simulations were implemented in ... (MOOSE), ..."
@Article{Galati_2025,
  author  = {Manuela Galati and Giovanni Rizza},
  title   = {{Phase-field simulation of particles rigid body motion at the early stage of sintering in powder bed fusion with electron beam: A proposal for computational efficiency}},
  journal = {Finite Elements in Analysis and Design},
  month   = jun,
  year    = 2025,
  volume  = 248,
  pages   = {104359 (16 pages)},
  note    = {\url{https://doi.org/10.1016/j.finel.2025.104359}}
}

% MOOSE/Cardinal
% "The present work discusses the development of a coupled neutronic-thermal hydraulics model with ... Cardinal ..."
% author:dalinger author:merzari SNAP Cardinal
@Misc{Dalinger_2025,
  author       = {Maximiliano Dalinger and Elia Merzari and Tri Nguyen and Michael Seneca and Richard Martineau},
  title        = {{Multiphysics modeling of SNAP 10A/2 space reactor with Cardinal}},
  month        = may,
  year         = 2025,
  howpublished = {ArXiv e-print},
  note         = {\url{https://arxiv.org/abs/2505.04024}}
}

% MOOSE
% "... thermal-mechanical modeling is performed with INL's ... (MOOSE)."
% This journal does not seem to have page or article numbers
@Article{Kendrick_2025,
  author  = {William Reed Kendrick and Benoit Forget},
  title   = {Coupled neutronic-thermal-mechanical simulation of the {KRUSTY} heat pipe microreactor},
  journal = {Frontiers in Nuclear Engineering},
  month   = apr,
  year    = 2025,
  volume  = 4,
  pages   = {xx (14 pages)},
  note    = {\url{https://doi.org/10.3389/fnuen.2025.1589780}}
}

% MOOSE
% "... using the MOOSE Framework, ... we employ a TM-coupled model to conduct a 3D numerical analysis..."
@Article{Tian_2025,
  author  = {Deyan Tian and Kavan Khaledi and Mohammadreza Jalali and Florian Amann},
  title   = {Long-term cyclic thermo-mechanical behavior of vertical and horizontal salt caverns for hydrogen storage},
  journal = {Journal of Energy Storage},
  month   = jul,
  year    = 2025,
  volume  = 124,
  pages   = {116661 (14 pages)},
  note    = {\url{https://doi.org/10.1016/j.est.2025.116661}}
}

% MOOSE/Zapdos
% "... a 0D chemistry model of the plasma and effluent was created using the Zapdos application. Zapdos is ... on the ... (MOOSE) framework ..."
@Article{Robinson_2025,
  author  = {Conner D. Robinson and Nicholas L. Sponsel and Katharina Stapelmann},
  title   = {{Bubbling water-treating DBD plasma device optimization using experimental and computational methods}},
  journal = {Plasma Processes and Polymers},
  month   = may,
  year    = 2025,
  volume  = 22,
  number  = 5,
  pages   = {e70000 (10 pages)},
  note    = {\url{https://doi.org/10.1002/ppap.70000}}
}

% MOOSE/Griffin
% "The capabilities of Griffin with these three ENDF/B cross-section libraries were rigorously tested..."
@Article{CLee_2025,
  author  = {Changho Lee and Hansol Park and Yeon Sang Jung and Cooper Trucks},
  title   = {{High-fidelity simulation of the Empire microreactor benchmark problem using Griffin with online cross section generation}},
  journal = {Nuclear Science and Engineering},
  month   = apr,
  year    = 2025,
  volume  = 199,
  pages   = {S42--S55},
  note    = {\url{https://doi.org/10.1080/00295639.2024.2348855}, Special issue featuring papers from the 2023 International Conference on Mathematics and Computational Methods Applied to Nuclear Science and Engineering (M\&C 2023)}
}

% MOOSE/MaCaw
@Article{Giudicelli_2025b,
  author  = {G. Giudicelli and R. Crowder and L. Harbour and D. Gaston},
  title   = {{MaCaw: Domain-decomposed Monte Carlo neutral particle transport on unstructured mesh in MOOSE}},
  journal = {Nuclear Science and Engineering},
  month   = apr,
  year    = 2025,
  volume  = 199,
  pages   = {S397--S405},
  note    = {\url{https://doi.org/10.1080/00295639.2024.2332009}, Special issue featuring papers from the 2023 International Conference on Mathematics and Computational Methods Applied to Nuclear Science and Engineering (M\&C 2023)}
}

% MOOSE
% "We ... conducted our simulations using the open-source FEM solver MOOSE Framework..."
@Article{Subedi_2025b,
  author  = {Upadesh Subedi and Nele Moelans and Tomasz Ta{\'{n}}ski and Anil Kunwar},
  title   = {{A non-isothermal multi-phase field approach to model the meltpool and IMC grains interaction in Ti-Au material}},
  journal = {Computational Materials Science},
  month   = jun,
  year    = 2025,
  volume  = 255,
  pages   = {113875 (xx pages)},
  note    = {\url{https://doi.org/10.1016/j.commatsci.2025.113875}}
}

% MOOSE
% "... (MOOSE) non-linear solver ... was compared in its phase field implementation to that of PRISMS-PF..."
% https://www.researchgate.net/publication/391156605_Reduced_gravity_and_microgravity_Integrated_Computational_Materials_Engineering_ICME/references
% https://ntrs.nasa.gov/api/citations/20250000717/downloads/BPS%20ICME%20final%20report%20-%20April%202025%20final.pdf
@TechReport{OConnor_2025,
  author      = {Andrew O'Connor and others},
  title       = {{Reduced gravity and microgravity Integrated Computational Materials Engineering (ICME)}},
  institution = {NASA},
  day         = 1,
  month       = apr,
  year        = 2025,
  number      = {NASA/TM--20250000717},
  note        = {\url{https://tinyurl.com/yc7um4ke}}
}

% MOOSE
% "In this work, a MOC-based multiphysics coupling method ... within the ... (MOOSE) framework is developed and verified."
@Article{KFeng_2025,
  author  = {KuaiYuan Feng and Qufei Song and Yihu Wang and Hui Guo and Tenglong Cong and Yao Xiao and Hanyang Gu},
  title   = {{Development of a MOC-based multiphysics coupling method for analysis of FCM-fueled micro gas-cooled reactor}},
  journal = {Nuclear Engineering and Technology},
  month   = sep,
  year    = 2025,
  volume  = 57,
  number  = 9,
  pages   = {103645 (27 pages)},
  note    = {\url{https://doi.org/10.1016/j.net.2025.103645}}
}

% MOOSE
% author:dhulipala author:german ProbML
@Misc{Dhulipala_2025,
  author       = {Somayajulu L. N. Dhulipala and Peter German and Yifeng Che and Zachary M. Prince and Pierre-Cl{\'{e}}ment A. Simon and Xianjian Xie and Vincent M. Labour{\'{e}} and Hao Yan},
  title        = {{MOOSE ProbML: Parallelized probabilistic machine learning and uncertainty quantification for computational energy applications}},
  month        = apr,
  year         = 2025,
  howpublished = {ArXiv e-print},
  note         = {\url{https://arxiv.org/abs/2504.17101}}
}

% MOOSE
% "A coupled monolithic algorithm is employed ... (MOOSE) ..."
@Article{Habib_2025,
  author  = {Nour Habib and Saber {El Arem} and Amine Ammar},
  title   = {On the strain energy decomposition in phase field brittle fracture: established models and novel cleavage plane-based techniques},
  journal = {Advanced Modeling and Simulation in Engineering Sciences},
  month   = apr,
  year    = 2025,
  volume  = 12,
  pages   = {7 (36 pages)},
  note    = {\url{https://doi.org/10.1186/s40323-025-00295-5}}
}

% MOOSE
@Article{HuZhang_2025,
  author  = {Hu Zhang and Da Li and Tianliang Hu and Guangchun Zhang and Duoyu Jiang and Qianwei Chen and Henglin Hu},
  title   = {{SphiNx: A SN-DFEM Neutron Transport Code Based on the MOOSE Framework}},
  journal = {Nuclear Engineering and Technology},
  month   = sep,
  year    = 2025,
  volume  = 57,
  number  = 9,
  pages   = {103641 (28 pages)},
  note    = {\url{https://doi.org/10.1016/j.net.2025.103641}}
}

% MOOSE/REDBACK
% "The open-source, parallel-processing capable finite element package MOOSE/REDBACK was used as the main FEA platform..."
% This is a "Nature Portfolio journal"
@Article{Lindqwister_2025,
  author  = {W. Lindqwister and J. Peloquin and L. E. Dalton and K. Gall and M. Veveakis },
  title   = {Predicting compressive stress-strain behavior of elasto-plastic porous media via morphology-informed neural networks},
  journal = {Communications Engineering},
  month   = apr,
  year    = 2025,
  volume  = 4,
  pages   = {73 (12 pages)},
  note    = {\url{https://doi.org/10.1038/s44172-025-00410-9}}
}

% MOOSE
% "The physics-based thermal response model in this work is ... based on ... (MOOSE) ..."
@Article{YLi_2025,
  author  = {Yongxiang Li and Xiao Liu and Xiangdong Wang and Wei Xie and Di Qiu and Jiong Yang},
  title   = {Effect of material properties on the thermal responses of the carbonization and pyrolysis layers of polymer matrix composites for charring-ablators},
  journal = {Journal of Materials Informatics},
  month   = apr,
  year    = 2025,
  volume  = 5,
  number  = 3,
  pages   = {31 (15 pages)},
  note    = {\url{https://doi.org/10.20517/jmi.2024.104}}
}

% MOOSE
% "Implemented in MOOSE ..., the model leverages advanced numerical techniques, ..."
@Article{Cumbunga_2025,
  author  = {Judice Cumbunga and Sa{\"{i}}d Abboudi and Dominique Chamoret},
  title   = {{Computational model and simulation of the solid-state sintering process as a thermal treatment for metal extrusion additive manufacturing: Microstructural and Multiphysics approach}},
  journal = {Computer Methods in Applied Mechanics and Engineering},
  month   = jun,
  year    = 2025,
  volume  = 441,
  pages   = {117978 (18 pages)},
  note    = {\url{https://doi.org/10.1016/j.cma.2025.117978}}
}

% IBAMR/libMesh
% "IBAMR uses SAMRAI ..., PETSc ..., and libMesh ... provides the finite element discretization."
@Article{LLi_2025,
  author  = {Lianxia Li and Cole Gruninger and Jae H. Lee and Boyce E. Griffith},
  title   = {{Local divergence-free immersed finite element-difference method using composite B-splines}},
  journal = {Advances in Computational Science and Engineering},
  month   = jun,
  year    = 2025,
  volume  = 4,
  pages   = {16--56},
  note    = {\url{https://doi.org/10.3934/acse.2025011}}
}

% MOOSE/PorousFlow
% "The governing equations are solved using ... the PorousFlow module ... in ... (MOOSE) ..."
@Article{HOh_2025,
  author  = {Hyunjun Oh and Wencheng Jin and Peng Peng and Jeffrey A. Winick and David Sickinger and Dale Sartor and Yingqi Zhang and Koenraad Beckers and Kevin Kitz and Diana Acero-Allard and Trevor A. Atkinson and Patrick Dobson},
  title   = {Techno-economic performance of reservoir thermal energy storage for data center cooling system},
  journal = {Applied Energy},
  month   = aug,
  year    = 2025,
  volume  = 391,
  pages   = {125858 (19 pages)},
  note    = {\url{https://doi.org/10.1016/j.apenergy.2025.125858}}
}

% MOOSE/BlackBear
% Note: the Oct 2024 engrXiv e-print has a slightly different title,
% "Computational assessment of alkali-silica-reaction impact on the seismic capacity of nuclear containment vessels"
% but the authors are the same, so I'm treating it as a preprint for this paper.
@Article{Dahal_2025b,
  author  = {Albert Dahal and Benjamin W. Spencer and Somayajulu L. N. Dhulipala and Amit Jain and Luis F. Ibarra},
  title   = {Coupled alkali-silica-reaction/seismic simulation of nuclear containment vessels},
  journal = {International Journal of Mechanical Sciences},
  month   = may,
  year    = 2025,
  volume  = 294,
  pages   = {110185 (xx pages)},
  note    = {\url{https://doi.org/10.1016/j.ijmecsci.2025.110185}, engr$\chi$iv e-print: \url{https://doi.org/10.31224/4042}}
}

% MOOSE
% "For all PF simulations, the ... equations ... were solved using the ... (MOOSE) framework ..."
@Article{Ta_2025,
  author  = {An T. Ta and Yixi Shen and R. Seaton Ullberg and Michael R. Tonks and Simon R. Phillpot and Douglas E. Spearot},
  title   = {Impact of position and density of nanoscale voids on fracture initiation in iron from phase field fracture simulation},
  journal = {Mechanics of Materials},
  month   = jul,
  year    = 2025,
  volume  = 206,
  pages   = {105348 (xx pages)},
  note    = {\url{https://doi.org/10.1016/j.mechmat.2025.105348}}
}

% MOOSE/BISON
% "Based on BISON simulations, ..., [the authors] generated 400 data points of PCMIs for a 10-pellet PWR fuel rod ..."
% A BISON dataset generated by the authors is used in the current study.
% author:panczyk author:erdem opening the black-box
@Misc{Panczyk_2025,
  author       = {Nataly R. Panczyk and Omer F. Erdem and Majdi I. Radaideh},
  title        = {{Opening the black-box: Symbolic regression with Kolmogorov--Arnold networks for energy applications}},
  month        = apr,
  year         = 2025,
  howpublished = {ArXiv e-print},
  note         = {\url{https://arxiv.org/abs/2504.03913}}
}

% MOOSE
% "We coupled our in-house wellbore simulator (Moskito) with the reservoir simulator (PorousFlow) under the MOOSE framework to analyze wellbore heat loss."
% See also: the conference paper GYan_2025
@Article{GYan_2025b,
  author  = {Guoqiang Yan and P{\aa}l {\O}steb{\o} Andersen and Yangyang Qiao and Dimitrios Georgios Hatzignatiou and Bo Feng and Thomas Kohl},
  title   = {Investigating the impact of wellbore lateral heat transfer on the performance of high-temperature aquifer thermal energy storage system by the coupling of wellbore and reservoir simulators},
  journal = {Geoenergy Science and Engineering},
  month   = aug,
  year    = 2025,
  volume  = 251,
  pages   = {213874 (21 pages)},
  note    = {\url{https://doi.org/10.1016/j.geoen.2025.213874}}
}

% MOOSE
% "The software that are utilized in the process are 3D Slicer ..., MOOSE framework ... and ParaView ..."
@Article{Paul_2025,
  author  = {Debangshu Paul and Zachariah Arwood and Pierre-Yves Mulon and Dayakar Penumadu and Timothy Truster},
  title   = {Phase field modeling for fracture prediction in goat tibia using an open-source quantitative computer tomography based finite element framework},
  journal = {Biomedical Engineering Advances},
  month   = jun,
  year    = 2025,
  volume  = 9,
  pages   = {100164 (45 pages)},
  note    = {\url{https://doi.org/10.1016/j.bea.2025.100164}}
}

% MOOSE
% "We calibrate the simulation results in the ... (MOOSE) framework..."
% See also: Darabi_2023, Darabi_2024
@Article{Darabi_2025,
  author  = {Roya Darabi and Ana Reis and Jose Cesar {de Sa}},
  title   = {{Exploring the dynamic transition from aging to additive manufacturing: Investigating microstructural evolution of metastable $\gamma''$ precipitates in Inconel 625 through coupled phase-field simulation}},
  journal = {Advanced Engineering Materials},
  month   = apr,
  year    = 2025,
  volume  = 27,
  number  = 7,
  pages   = {2402374 (xx pages)},
  note    = {\url{https://doi.org/10.1002/adem.202402374}}
}

% libMesh/PETSc
% "The algorithms are implemented using libMesh ... for generating the stiffness matrices, and PETSc ... for the linear solver."
@Article{LiLuo_2025,
  author  = {Li Luo and Qian Zhang and Haochen Liu and Jinpeng Zhang and Xiao-Ping Wang},
  title   = {{A numerical study of two-phase flows in complex domain with a generalized Navier slip and penetration boundary condition on permeable boundaries}},
  journal = {Journal of Computational Physics},
  month   = jul,
  year    = 2025,
  volume  = 533,
  pages   = {113980 (xx pages)},
  note    = {\url{https://doi.org/10.1016/j.jcp.2025.113980}}
}

% MOOSE
@Article{TianchenHu_2025,
  author  = {Tianchen Hu and Mark C. Messner},
  title   = {{A simple, scalable large deformation solid mechanics implementation in the MOOSE framework}},
  journal = {ACM Transactions on Mathematical Software},
  month   = mar,
  year    = 2025,
  volume  = 51,
  number  = 1,
  pages   = {4 (22 pages)},
  note    = {\url{https://doi.org/10.1145/3716308}}
}

% MOOSE
% "FE model is coupled with phase field damage using the MOOSE multiphysics finite element framework ..."
@Article{DHu_2025,
  author  = {Daijun Hu and Nicol{\`{o}} Grilli and Wentao Yan},
  title   = {{From process to property: multi-physics modeling of dislocation dynamics and microscale damage in metal additive manufacturing}},
  journal = {Computational Mechanics},
  month   = apr,
  year    = 2025,
  volume  = 75,
  number  = 4,
  pages   = {1241--1261},
  note    = {\url{https://doi.org/10.1007/s00466-024-02560-7}}
}

% MOOSE
% "The model is implemented in ... (MOOSE) ..."
@Article{Dahal_2025,
  author  = {Albert Dahal and Luis Ibarra},
  title   = {Development of a consistent hysteretic model with kinematic hardening and isotropic softening},
  journal = {Structures},
  month   = may,
  year    = 2025,
  volume  = 75,
  pages   = {108766 (14 pages)},
  note    = {\url{https://doi.org/10.1016/j.istruc.2025.108766}}
}

% MOOSE
% "First, we implemented a fully coupled in-house wellbore simulator (MOSKIO) integrated with a reservoir simulator (PorousFlow) under the framework of MOOSE..."
@InProceedings{GYan_2025,
  author    = {G. Yan and P. {\O}. Andersen and Y. Qiao and D. G. Hatzignatiou and T. Kohl},
  title     = {Impact of wellbore lateral heat transfer on the performance of high-temperature aquifer thermal energy storage system},
  booktitle = {{Proceedings of the 23rd European Symposium on IOR (IOR+ 2025)}},
  address   = {Edinburgh, Scotland},
  pages     = {xx (10 pages)},
  month     = apr # {~2--4,},
  year      = 2025,
  note      = {\url{https://doi.org/10.3997/2214-4609.202531057}}
}

% MOOSE
% "The crystal plasticity and phase-field damage model are implemented into the finite element framework MOOSE..."
@Article{YingyingWang_2025,
  author  = {Yingying Wang and Nicol{\`{o}} Grilli and Michael Salvini and Yao Yao},
  title   = {{Microscale deformation, residual stress and fracture behavior of additively manufactured alpha-Ti: Combined crystal plasticity and phase-field damage modeling}},
  journal = {Computational Materials Science},
  month   = apr,
  year    = 2025,
  volume  = 252,
  pages   = {113767 (xx pages)},
  note    = {\url{https://doi.org/10.1016/j.commatsci.2025.113767}}
}

% libmesh
% "the numerical solution was performed with a heat flow model with phase transition that we implemented within the Libmesh finite element library ..."
% author:luthi author:wasser calorimetric
@Misc{Luthi_2025,
  author       = {M. P. L{\"{u}}thi and D. Wasser and L. Moreau},
  title        = {{Calorimetric in-situ determination of ice water content in two Alpine glaciers}},
  month        = mar,
  year         = 2025,
  howpublished = {EGUsphere Preprint},
  note         = {\url{https://doi.org/10.5194/egusphere-2025-832}}
}

% MOOSE
% "CFD simulations were performed with the open source Multiphysics Object-Oriented Simulation Environment framework..."
@Article{Quesada_2025,
  author  = {Mar{\'{i}}a J. {Herrera Quesada} and Sebastian Pfaff and Jordyn Polito and Grayson Gall and Mark J. Kushner and Jonathan H. Frank and Katharina Stapelmann},
  title   = {{Two-dimensional mapping of absolute OH densities in an atmospheric pressure plasma effluent via planar laser-induced fluorescence: effects of He/H$_2$O and He/O$_2$ mixtures in N$_2$ and air, with and without solid targets}},
  journal = {Journal of Physics D: Applied Physics},
  month   = mar,
  year    = 2025,
  volume  = 58,
  number  = 17,
  pages   = {175205 (18 pages)},
  note    = {\url{https://doi.org/10.1088/1361-6463/adc13a}}
}

% MOOSE
% "Furthermore, the models initially developed in FEniCS were also implemented in MOOSE, providing alternative frameworks for simulation."
@mastersthesis{Pashaei_thesis,
  author = {Mahdi Pashaei},
  school = {McMaster University},
  title  = {Developing a coupled microstructure fluid flow model for solidification in additive manufacturing},
  note   = {\url{https://doi.org/10.13140/RG.2.2.16923.58408}},
  month  = feb,
  year   = 2025
}

% libMesh/RMC
% "To achieve this, the RMC-libMesh interface layer is developed based on the libMesh."
@Article{JieLi_2025,
  author  = {Jie Li and Pengfei Shen and Zhaoyuan Liu and Qing Li and Kan Wang},
  title   = {{Development and verification of transport and tally capabilities based on unstructured mesh in Reactor Monte Carlo code RMC}},
  journal = {Nuclear Engineering and Technology},
  month   = jun,
  year    = 2025,
  volume  = 57,
  number  = 6,
  pages   = {103404 (14 pages)},
  note    = {\url{https://doi.org/10.1016/j.net.2024.103404}}
}

% MOOSE/HADES
% "The code used for thermal-hydraulic behavior analysis is the HADES code ... based on ... (MOOSE)..."
@Article{SPark_2025b,
  author  = {Samuel Park and Eunbi Cho and Jieon Kim and Pilhyeon Ju and Taehoon Park and Jaeyeong Park and Jun-Yeop Lee and Hwasung Yeom and Yongheum Jo and Yongdeog Kim and Sungyeol Choi},
  title   = {Technical, regulatory, and policy feasibility assessments of rod consolidation in spent nuclear fuel disposal},
  journal = {Nuclear Engineering and Technology},
  month   = may,
  year    = 2025,
  volume  = 57,
  number  = 5,
  pages   = {103330 (11 pages)},
  note    = {\url{https://doi.org/10.1016/j.net.2024.11.032}}
}

% MOOSE
% "We adopt the open source ... (MOOSE) ... to implement this PFM."
% See also: WTang_2023, WTang_2025
@Article{WTang_2025b,
  author  = {Wei Tang and Qihua Gong and Min Yi and Bai-Xiang Xu},
  title   = {{Thermodynamically consistent phase-field modeling of elastocaloric effect: Indirect vs direct method}},
  journal = {International Journal of Mechanical Sciences},
  month   = apr,
  year    = 2025,
  volume  = {291--292},
  pages   = {110134 (xx pages)},
  note    = {\url{https://doi.org/10.1016/j.ijmecsci.2025.110134}}
}

% MOOSE
% The preprint's reference section is missing.
% See also: WTang_2023, WTang_2025b
@Article{WTang_2025,
  author  = {Wei Tang and Lingfeng Wang and Shen Sun and Liucheng Zhou and Min Yi},
  title   = {{Macroscopically modeling fatigue life of additively manufactured metals: Pore-defect informed phase-field model}},
  journal = {Journal of the Mechanics and Physics of Solids},
  month   = mar,
  year    = 2025,
  volume  = 196,
  pages   = {106008 (xx pages)},
  note    = {\url{https://doi.org/10.1016/j.jmps.2024.106008}, SSRN Preprint: \url{https://ssrn.com/abstract=4915199}}
}

% MOOSE
% "Develop the multiplication [sic] in ... (MOOSE) to transfer information from the macro phase-field and process modeling scale ..."
@Article{Darabi_2025b,
  author  = {Roya Darabi and Jo{\~{a}}o Pedro Oliveira and Narguess Nemati and Ana Reis and Jose Cesar {de S{\'{a}}}},
  title   = {{Benchmarking advanced multiphase field modeling of Inconel 625 in additive manufacturing: Correlating powder bed fusion with dendrite growth and crack formation}},
  journal = {Materialia},
  month   = may,
  year    = 2025,
  volume  = 40,
  pages   = {102384 (19 pages)},
  note    = {\url{https://doi.org/10.1016/j.mtla.2025.102384}}
}

% MOOSE
% "In the development of our software application, MESMER, it was prudent to make use of preexisting features on the MOOSE platform..."
% https://etheses.whiterose.ac.uk/id/eprint/36367/3/RAM_Thesis_Final-compressed.pdf
@phdthesis{Mackay_thesis,
  author = {Robert Alexander Mackay},
  school = {University of Leeds},
  title  = {Phase field modelling of magnetoelasticity in antiferromagnets},
  note   = {\url{https://etheses.whiterose.ac.uk/id/eprint/36367/}},
  month  = mar,
  year   = 2025
}

% MOOSE/BISON
% "The multiphysics model ... is solved using ... [the] (MOOSE) platform as a part of the BISON fuel performance code ..."
@Article{Ferrigno_2025,
  author  = {Joshua Ferrigno and Tsvetoslav Pavlov and Pierre-Cl{\'{e}}ment Simon and Mathew Goodson and Ethan Hisle and Stephen Novascone and Fabiola Cappia and Marat Khafizov},
  title   = {Integrated multiscale experiment and model analysis of radially resolved microstructure and thermal conductivity in mixed oxide fuel},
  journal = {Journal of Nuclear Materials},
  month   = may,
  year    = 2025,
  volume  = 609,
  pages   = {155739 (16 pages)},
  note    = {\url{https://doi.org/10.1016/j.jnucmat.2025.155739}}
}

% MOOSE
% "To solve the equations numerically, we utilise ... (MOOSE), ..."
@Article{Ghasemi_2025,
  author  = {Mehdi Ghasemi and Lev Sarkisov and Peter M. Budd and Masoud Babaei},
  title   = {Advanced insights into the role of interfacial defect morphology in mixed matrix membrane gas transport},
  journal = {Journal of Membrane Science},
  month   = apr,
  year    = 2025,
  volume  = 723,
  pages   = {123883 (13 pages)},
  note    = {\url{https://doi.org/10.1016/j.memsci.2025.123883}}
}

% MOOSE
% "We aim to quantify that impact using three MOOSE-based multiphysics models of MSRs: ..."
@Article{Nasr_2025,
  author  = {Fadel M. Nasr and Mauricio Tano and Piyush Sabharwall and Yousry Azmy},
  title   = {{Global sensitivity analysis using Gaussian process surrogate models \& impact of thermophysical properties uncertainties on the steady-state operation of molten salt reactors}},
  journal = {Annals of Nuclear Energy},
  month   = jul,
  year    = 2025,
  volume  = 217,
  pages   = {111304 (26 pages)},
  note    = {\url{https://doi.org/10.1016/j.anucene.2025.111304}}
}

% MOOSE
% "The resulting partial differential equations (PDEs) are solved using the finite element method (FEM) ... within ... (MOOSE) ..."
@Article{Gencturk_2025,
  author  = {Merve Gencturk and Nicholas Faulkner and Karim Ahmed},
  title   = {{Thermo-mechanical phase-field modeling of fracture in high-burnup UO$_2$ fuels under transient conditions}},
  journal = {Materials},
  month   = mar,
  year    = 2025,
  volume  = 18,
  number  = 5,
  pages   = {1162 (24 pages)},
  note    = {\url{https://doi.org/10.3390/ma18051162}}
}

% MOOSE
% "The 3D FEA model developed uses ... (MOOSE)"
@Article{Martinez-Loran_2025,
  author  = {Erick Martinez-Loran and Daniel Schwen and Benjamin W. Spencer and Jose Boedo and Eric Hollmann},
  title   = {Dependence of heat removal rate of pebble-based rods on inter-pebble matrix fill fraction},
  journal = {Fusion Science and Technology},
  month   = mar,
  year    = 2025,
  volume  = 81,
  number  = 3,
  pages   = {208--218},
  note    = {\url{https://doi.org/10.1080/15361055.2024.2395133}}
}

% MOOSE
% "The SVEs of our study are modeled with the open-source finite element software MOOSE..."
@Article{Gorgogianni_2025,
  author  = {Anna Gorgogianni and Tanguy Ramanantsoavina and Chlo{\'{e}} Arson},
  title   = {Error propagation from microstructure changes to apparent stiffness in {2D} biphase matrix-inclusion composites},
  journal = {European Journal of Mechanics - A/Solids},
  month   = jul # {--} # aug,
  year    = 2025,
  volume  = 112,
  pages   = {105612 (19 pages)},
  note    = {\url{https://doi.org/10.1016/j.euromechsol.2025.105612}}
}

% MOOSE
@Article{Altahhan_2025,
  author  = {Muhammad Ramzy Altahhan and Nicholas Herring and Sebastian Schunert and Yousry Azmy},
  title   = {{Development and integration of a tool for physics-based shape and topology optimization in the MOOSE multiphysics simulation framework}},
  journal = {Progress in Nuclear Energy},
  month   = mar,
  year    = 2025,
  volume  = 181,
  pages   = {105619 (16 pages)},
  note    = {\url{https://doi.org/10.1016/j.pnucene.2025.105619}}
}

% MOOSE/MASTODON
% "The numerical simulations are conducted using the open-source finite element application MASTODON..."
@Article{Veeraraghavan_2025,
  author  = {Swetha Veeraraghavan and Bhavesh Banjare},
  title   = {A modified domain reduction method for analysing the {3D} seismic response of long tunnels},
  journal = {Tunnelling and Underground Space Technology},
  month   = may,
  year    = 2025,
  volume  = 159,
  pages   = {106461 (xx pages)},
  note    = {\url{https://doi.org/10.1016/j.tust.2025.106461}}
}

% MOOSE
@Article{Simon_2025b,
  author  = {Pierre-Cl{\'{e}}ment A. Simon and Casey T. Icenhour and Gyanender Singh and Alexander D. Lindsay and Chaitanya Bhave and Lin Yang and Adriaan Riet and Yifeng Che and Paul Humrickhouse and Pattrick Calderoni and Masashi Shimada},
  title   = {{MOOSE-based Tritium Migration Analysis Program, Version 8 (TMAP8) for advanced open-source tritium transport and fuel cycle modeling}},
  journal = {Fusion Engineering and Design},
  month   = may,
  year    = 2025,
  volume  = 214,
  pages   = {114874 (23 pages)},
  note    = {\url{https://doi.org/10.1016/j.fusengdes.2025.114874}}
}

% IBAMR/libMesh
% "The IB/FE LV model is implemented with the open-source IBAMR software ..."
% "IBAMR is ... leveraging functionality provided by ...  libMesh for finite element discretization management."
@Article{Gao_2025,
  author  = {Hao Gao and Debao Guan and Pierre-Fr{\'{e}}d{\'{e}}ric Villard},
  title   = {Assessing left ventricular pump function using an immersed boundary method combined with finite elements},
  journal = {International Journal of Fluid Engineering},
  month   = jun,
  year    = 2025,
  volume  = 2,
  number  = 2,
  pages   = {024302 (14 pages)},
  note    = {\url{https://doi.org/10.1063/5.0249784}}
}

% MOOSE
% "A tightly coupled multiphysics code system is established using the MOOSE framework ..."
@Article{Yu_2025,
  author  = {Y. Yu and H. Park and A. Novak and E. Shemon},
  title   = {High fidelity multiphysics tightly coupled model for a lead cooled fast reactor concept and application to statistical calculation of hot channel factors},
  journal = {Nuclear Engineering and Design},
  month   = apr,
  year    = 2025,
  volume  = 435,
  pages   = {113915 (xx pages)},
  note    = {\url{https://doi.org/10.1016/j.nucengdes.2025.113915}}
}

% MOOSE
% "Here, the tensor mechanics module of the highly parallel code MOOSE was used..."
@Article{Ellis_2025,
  author  = {W. M. E. Ellis and L. Reali and A. Davis and H. M. Brooks and I. Katramados and A. J. Thornton and R. A. Akers and S. L. Dudarev},
  title   = {Mechanical model for a full fusion tokamak enabled by supercomputing},
  journal = {Nuclear Fusion},
  month   = feb,
  year    = 2025,
  volume  = 65,
  number  = 3,
  pages   = {036033 (25 pages)},
  note    = {\url{https://doi.org/10.1088/1741-4326/adb443}, ArXiv e-print: \url{https://arxiv.org/abs/2409.13554}}
}

% MOOSE
% "... JAX-CPFEM features high performance through ... GPU acceleration, achieving a 39x speedup ... compared to MOOSE ..."
@Article{FHu_2025,
  author  = {Fanglei Hu and Stephen Niezgoda and Tianju Xue and Jian Cao},
  title   = {{Efficient GPU-computing simulation platform JAX-CPFEM for differentiable crystal plasticity finite element method}},
  journal = {npj Computational Materials},
  month   = feb,
  year    = 2025,
  volume  = 11,
  pages   = {46 (16 pages)},
  note    = {\url{https://doi.org/10.1038/s41524-025-01528-2}}
}

% MOOSE
% "A MOOSE-based application for the HCF under normal conditions and LOCA is developed ..."
% See also: YHou_2024
@Article{YHou_2025,
  author  = {Yandong Hou and Yiliang Dong and Chuntian Gao and Bowen Chen and Chao Zhang and Weichao Li and Yan Xiang},
  title   = {{Performance analysis of U-50Zr helical cruciform fuel during loss-of-coolant accidents based on MOOSE framework}},
  journal = {Annals of Nuclear Energy},
  month   = jun,
  year    = 2025,
  volume  = 215,
  pages   = {111254 (xx pages)},
  note    = {\url{https://doi.org/10.1016/j.anucene.2025.111254}}
}

% MOOSE
% "... we solve the thermal field in 3D using the multi-purpose MOOSE finite element framework..."
@Article{McElfresh_2025,
  author  = {Cameron McElfresh and Jaime Marian},
  title   = {{Investigation of microstructures produced by metal additive manufacturing using 3D cellular automata finite element modeling}},
  journal = {Journal of Materials Research and Technology},
  month   = mar # {--} # apr,
  year    = 2025,
  volume  = 35,
  pages   = {4301--4314},
  note    = {\url{https://doi.org/10.1016/j.jmrt.2025.01.247}}
}

% MOOSE
% "The model is implemented in MATLAB and is validated against 3D FE simulations from the commercial software ANSYS and the multiphysics FE code MOOSE..."
@Article{AlzateCobo_2025,
  author  = {Juan C. {Alzate Cobo} and Xiang-Long Peng and Bai-Xiang Xu and Oliver Weeger},
  title   = {{A finite swelling 3D beam model with axial and radial diffusion}},
  journal = {Computer Methods in Applied Mechanics and Engineering},
  month   = jun,
  year    = 2025,
  volume  = 441,
  pages   = {117983 (21 pages)},
  note    = {\url{https://doi.org/10.1016/j.cma.2025.117983}, SSRN Preprint: \url{https://doi.org/10.2139/ssrn.5139774}}
}

% MOOSE
% "The software used for the FEA was ... (MOOSE) ..."
@Article{Pili_2025,
  author  = {Nathan Pili and Tristan J. Lowe and Lee Margetts and Kevin Pickup and William I. Sellers and Emma L. Nicholls and Philip J. Withers and Phillip L. Manning},
  title   = {{Harnessing 3D microarchitecture of pterosaur bone using multi-scale X-ray CT for aerospace material design}},
  journal = {Scientific Reports},
  month   = feb,
  year    = 2025,
  volume  = 15,
  number  = 1,
  pages   = {5719 (13 pages)},
  note    = {\url{https://doi.org/10.1038/s41598-025-88257-0}}
}

% MOOSE/CRANE
% "The reaction network was solved using CRANE ... an open-source chemical kinetic solver built on the MOOSE framework ..."
@Article{Jayanarasimhan_2025,
  author  = {Ananthanarasimhan Jayanarasimhan and Robert Pierrard and Sean M. Peyres and Shurik Yatom and Davide Curreli and R. Mohan Sankaran},
  title   = {Insights into sustainable nitrogen fixation by gas-phase spectroscopic measurements and global modeling of reaction intermediates in humid nitrogen plasma},
  journal = {ACS Sustainable Chemistry \& Engineering},
  month   = jan,
  year    = 2025,
  volume  = 13,
  number  = 1,
  pages   = {140--150},
  note    = {\url{https://doi.org/10.1021/acssuschemeng.4c05771}}
}

% MOOSE
% "The simulations for mechanical responses were performed under the open-source platform MOOSE."
@Article{LWang_2025,
  author  = {Lu Wang and Zixu Guo and Guochen Peng and Shiwei Wu and Yanming Zhang and Wentao Yan},
  title   = {Evaporation-induced composition evolution in metal additive manufacturing},
  journal = {Advanced Functional Materials},
  month   = feb,
  year    = 2025,
  volume  = 35,
  number  = 7,
  pages   = {2412071 (10 pages)},
  note    = {\url{https://doi.org/10.1002/adfm.202412071}}
}

% MOOSE
% "In this study, a quantitative analysis ... was conducted ... with the numerical code with the numerical code HADESNU, developed by authors based on MOOSE framework."
@Article{SPark_2025,
  author  = {Samuel Park and Pilhyeon Ju and Taehoon Park and Richard I. Foster and GyoSoon Kim and Sungyeol Choi},
  title   = {Thermal-hydraulic analysis of sequential disposal scenarios in a spent nuclear fuel repository},
  journal = {Progress in Nuclear Energy},
  month   = mar,
  year    = 2025,
  volume  = 181,
  pages   = {105662 (xx pages)},
  note    = {\url{https://doi.org/10.1016/j.pnucene.2025.105662}}
}

% MOOSE
% "It was created ... with phase field theory ... as implemented in the MOOSE ... finite element framework."
@Article{YCSu_2025,
  author  = {Yu-Chen Su and Mohammed H. Saffarini and Tommy Sewell and Zhen Chen},
  title   = {{Investigation of the impact response of bi-continuous nanoporous solids via the material point method: Verification against molecular dynamics predictions}},
  journal = {International Journal for Numerical and Analytical Methods in Geomechanics},
  month   = mar,
  year    = 2025,
  volume  = 49,
  number  = 4,
  pages   = {1200--1215},
  note    = {\url{https://doi.org/10.1002/nag.3925}}
}

% MOOSE
% "The finite-element aspects of our method were implemented using the MOOSE framework..."
@Article{KaiXie_2025,
  author  = {Kai Xie and Yongqing Huo and Zhongxin Li and Zhilin Wu},
  title   = {{ODE-DSN: A surrogate model for dynamic stiffness in microscopic RVE problems under nonuniform time-step strain inputs}},
  journal = {Journal of Computational Design and Engineering},
  month   = feb,
  year    = 2025,
  volume  = 12,
  number  = 2,
  pages   = {49--60},
  note    = {\url{https://doi.org/10.1093/jcde/qwaf012}}
}

% MOOSE
% "For structural analysis, an open-source finite element code developed by Idaho National Laboratory, MOOSE"
@Article{WDu_2025,
  author  = {Wenchao Du and Joseph Hayes and Kyle Myers and Bipul Barua and Wenhua Yu and Dileep Singh},
  title   = {{Development of a high-temperature Inconel 625 heat exchanger by model design and binder jetting additive manufacturing}},
  journal = {Materials \& Design},
  month   = mar,
  year    = 2025,
  volume  = 251,
  pages   = {113333 (xx pages)},
  note    = {\url{https://doi.org/10.1016/j.matdes.2024.113333}}
}

% MOOSE/phase_field
% "... a qualitative two-dimensional phase-field (PF) model was employed using ... (MOOSE) ..."
@Article{Bandala_2025,
  author  = {Erick Bandala and Lily Raymond and Kellen Mitchell and Fazlay Rubbi and John Thella and Bankole O. Osho and Amanendra K. Kushwaha and Mohammadreza Elahifard and Ji Su and Xing Zhang and Pradeep L. Menezes and Xiaoliang Wang and Pengbo Chu and Yiliang Liao and Yifei Jin},
  title   = {Distance-controlled direct ink writing of titanium alloy with enhanced shape diversity and controllable porosity},
  journal = {npj Advanced Manufacturing},
  month   = feb,
  year    = 2025,
  volume  = 2,
  number  = 1,
  pages   = {4 (10 pages)},
  note    = {\url{https://doi.org/10.1038/s44334-025-00016-1}}
}

% MOOSE/Griffin
@Article{YSJung_2025,
  author  = {Yeon Sang Jung and Yaqi Wang and Changho Lee},
  title   = {Development of transport solver based on hybrid finite element method in {Griffin}},
  journal = {Annals of Nuclear Energy},
  month   = may,
  year    = 2025,
  volume  = 214,
  pages   = {111128 (xx pages)},
  note    = {\url{https://doi.org/10.1016/j.anucene.2024.111128}}
}

% MOOSE
% This preprint is distinct from Mostafavi_2025, they have the same authors but different titles.
% "The equation system ... is solved by the finite element method ... within the MOOSE framework ..."
@Article{Mostafavi_2025b,
  author  = {Ali Mostafavi and Mohammadmahdi Ranjbar and Vitaliy Yurkiv and Alexander L. Yarin and Farzad Mashayek},
  title   = {On the energy analysis of two-phase flows simulated with the diffuse interface method},
  journal = {Physics of Fluids},
  month   = jul,
  year    = 2025,
  volume  = 37,
  number  = 7,
  pages   = {072125 (xx pages)},
  note    = {\url{https://doi.org/10.1063/5.0276045}, ArXiv e-print: \url{https://arxiv.org/abs/2501.11643}}
}

% MOOSE
@Article{Mostafavi_2025,
  author  = {Ali Mostafavi and Mohammadmahdi Ranjbar and Vitaliy Yurkiv and Alexander L. Yarin and Farzad Mashayek},
  title   = {{MOOSE-based finite element framework for mass-conserving two-phase flow simulations on adaptive grids using the diffuse interface approach and a Lagrange multiplier}},
  journal = {Journal of Computational Physics},
  month   = apr,
  year    = 2025,
  volume  = 527,
  pages   = {113755 (xx pages)},
  note    = {\url{https://doi.org/10.1016/j.jcp.2025.113755}, SSRN e-print: https://doi.org/10.2139/ssrn.4890110}
}

% MOOSE
% "The ... problem ... has been implemented ... within ... MFM-FM ... based on the MOOSE framework ..."
% author:yang author:chen author:foster multiphysics simulations microstructure
@Misc{Kuhn_2025,
  author       = {Patrick K{\"{u}}hn and Yangyiwei Yang and Guanyu Chen and Shanelle N. Foster and Herbert Egger and Bai-Xiang Xu},
  title        = {Multiphysics simulations of microstructure influence on hysteresis and eddy current losses of electrical steel},
  month        = feb,
  year         = 2025,
  howpublished = {ArXiv e-print},
  note         = {\url{https://arxiv.org/abs/2502.01559}}
}

% MOOSE
% "Complex arithmetic is not directly implemented in most computational simulation software, including the one employed here, ... (MOOSE, ...)"
@Article{Shah_2025,
  author  = {Haritya Shah and Murthy Guddati},
  title   = {{Towards linking histological changes to liver viscoelasticity: A hybrid analytical-computational micromechanics approach}},
  journal = {Physics in Medicine \& Biology},
  month   = feb,
  year    = 2025,
  volume  = 70,
  number  = 4,
  pages   = {045005 (19 pages)},
  note    = {\url{https://doi.org/10.1088/1361-6560/adaad3}, ArXiv e-print: \url{https://arxiv.org/abs/2411.13530}}
}

% MOOSE
% "In the final step, the trained DNN acts as a surrogate model within the FEM framework in ... (MOOSE)."
% https://www.christianpeco.com/uploads/2/3/6/1/23617100/a_bio-lattice_deep_learning_framework_for_modeling_discrete_biological_materials.pdf
@Article{MKumar_2025,
  author  = {Manik Kumar and Nilay Upadhyay and Shishir Barai and Wesley F. Reinhart and Christian Peco},
  title   = {A bio-lattice deep learning framework for modeling discrete biological materials},
  journal = {Journal of the Mechanical Behavior of Biomedical Materials},
  month   = apr,
  year    = 2025,
  volume  = 164,
  pages   = {106900 (xx pages)},
  note    = {\url{https://doi.org/10.1016/j.jmbbm.2025.106900}, Preprint: \url{https://tinyurl.com/57atznp8}}
}

% MOOSE/fluid_properties
@Article{Giudicelli_2025,
  author  = {Guillaume Giudicelli and Christopher Green and Joshua Hansel and David Andrs and April Novak and Sebastian Schunert and Benjamin Spaude and Steven Isaacs and Matthias Kunick and Robert Salko and Shane Henderson and Lise Charlot and Alexander Lindsay},
  title   = {{The MOOSE fluid properties module}},
  journal = {Computer Physics Communications},
  month   = feb,
  year    = 2025,
  volume  = 307,
  pages   = {109407 (xx pages)},
  note    = {\url{https://doi.org/10.1016/j.cpc.2024.109407}}
}

% MOOSE/Pronghorn
% "The first part of the article describes the ... turbulence models recently introduced to Pronghorn in ... (MOOSE)."
@Article{Freile_2025,
  author  = {Ramiro Freile and Peter German and Mauricio Tano},
  title   = {{Evaluating turbulence modeling for thermal-hydraulics analysis of molten salt reactors}},
  journal = {Nuclear Engineering and Design},
  month   = feb,
  year    = 2025,
  volume  = 432,
  pages   = {113787 (xx pages)},
  note    = {\url{https://doi.org/10.1016/j.nucengdes.2024.113787}}
}

% MOOSE
% "An open-source platform, ... (MOOSE), is used to as an enable [sic] tool ..."
@Article{XZhou_2025,
  author  = {Xiaoming Zhou and Yongchao Liu and Manthar Ali and Min He},
  title   = {A multilevel-multiphysics modeling and simulation approach for multichip electronics},
  journal = {Applied Thermal Engineering},
  month   = may,
  year    = 2025,
  volume  = 266,
  pages   = {125738 (xx pages)},
  note    = {\url{https://doi.org/10.1016/j.applthermaleng.2025.125738}}
}

% MOOSE/BISON
% "The SIFGRS model in BISON ... is utilized here to provide the intra- and inter-granular fission gas bubble behavior ..."
@Article{Rizk_2025,
  author  = {Jason T. Rizk and Michael W. D. Cooper and Pierre-Cl{\'{e}}ment A. Simon and Anton J. Schneider and David A. Andersson and Stephen R. Novascone and Christopher Matthews},
  title   = {Mechanistic nuclear fuel performance modeling of uranium nitride},
  journal = {Journal of Nuclear Materials},
  month   = feb,
  year    = 2025,
  volume  = 606,
  pages   = {155604 (xx pages)},
  note    = {\url{https://doi.org/10.1016/j.jnucmat.2024.155604}}
}

% libMesh
% The equations of motion were solved using ... the GNU Scientific library ... and libMesh library (1.6.2)."
@Article{KahaneRapport_2025,
  author  = {Shirel R. Kahane-Rapport and Julia Teeple and James C. Liao and E. W. M. Paig-Tran and James A. Strother},
  title   = {Filter feeding in devil rays is highly sensitive to morphology},
  journal = {Proceedings of the Royal Society B: Biological Sciences},
  month   = jan,
  year    = 2025,
  volume  = 292,
  number  = 2039,
  pages   = {20242037 (12 pages)},
  note    = {\url{https://doi.org/10.1098/rspb.2024.2037}}
}

% Maybe MOOSE
% See also: Bhave_2023
% Requested full-text on ResearchGate
@Article{Bhave_2025,
  author  = {Chaitanya Bhave and Michael R. Tonks},
  title   = {{The effect of nickel coatings on corrosion of nickel-chrome alloys in molten FLiBe determined using a phase-field model}},
  journal = {Journal of Nuclear Materials},
  month   = feb,
  year    = 2025,
  volume  = 606,
  pages   = {155616 (xx pages)},
  note    = {\url{https://doi.org/10.1016/j.jnucmat.2025.155616}}
}

% MOOSE
% "In our investigation, the PorousFlow and TensorMechanics modules within the MOOSE framework ... were used to construct our numerical model ..."
@Article{Ouf_2025,
  author  = {Josselin Ouf and Philip J. Vardon and Kavan Khaledi and Wen Luo and Mohammadreza Jalali and Florian Amann},
  title   = {Numerical analysis of far-field fault reactivation induced by reservoir cooling},
  journal = {Geothermics},
  month   = mar,
  year    = 2025,
  volume  = 127,
  pages   = {103234 (13 pages)},
  note    = {\url{https://doi.org/10.1016/j.geothermics.2024.103234}}
}

% MOOSE
% "The aforementioned finite strain elastoplastic damage model was implemented within ... (MOOSE)."
@Article{Tan_2025,
  author  = {Tianwen Tan and Ikumu Watanabe},
  title   = {Gradient-enhanced ductile fracture constitutive modeling in implicit two-scale finite element analysis},
  journal = {Journal of the Mechanics and Physics of Solids},
  month   = mar,
  year    = 2025,
  volume  = 196,
  pages   = {106025 (25 pages)},
  note    = {\url{https://doi.org/10.1016/j.jmps.2025.106025}}
}

% libMesh
% "This document is written mainly as a documentation and reference for the implementation of infinite elements in the finite element library libMesh"
% author:marx mapped infinite elements
@Misc{Marx_2025,
  author       = {Tobias Marx},
  title        = {Mapped infinite elements in practice},
  month        = jan,
  year         = 2025,
  howpublished = {ArXiv e-print},
  note         = {\url{https://arxiv.org/abs/2501.05568}}
}

% MOOSE
% "DiscoFlux is implemented into the open-source finite element code MOOSE."
@Article{Chakraborty_2025,
  author  = {Subhendu Chakraborty and Abigail Hunter and D. J. Luscher},
  title   = {Modeling inter- and intra-granular dislocation transport using crystal plasticity},
  journal = {International Journal of Plasticity},
  month   = feb,
  year    = 2025,
  volume  = 185,
  pages   = {104222 (xx pages)},
  note    = {\url{https://doi.org/10.1016/j.ijplas.2024.104222}}
}

% MOOSE/GOLEM
% "In this study, we utilize the GOLEM simulator ... which is built upon the ... MOOSE framework..."
@Article{Vadiee_2025,
  author  = {Saeed Vadiee and Biao Li and Jasmin Raymond and Mafalda M. Miranda},
  title   = {{Numerical modeling of the long-term poromechanical performance of a deep enhanced geothermal system in northern Qu{\'{e}}bec}},
  journal = {Rock Mechanics Bulletin},
  month   = jan,
  year    = 2025,
  volume  = 4,
  number  = 1,
  pages   = {100170 (19 pages)},
  note    = {\url{https://doi.org/10.1016/j.rockmb.2024.100170}}
}

% MOOSE
% "Our model is based on the MOOSE/GOLEM framework..."
@Article{AbreuTorres_2025,
  author  = {Javier Abreu-Torres and Gerg{\H{o}} Hutka and Guido Bl{\"{o}}cher and Mauro Cacace and Vincent Magnenet and Jean Schmittbuhl},
  title   = {{Large-scale reservoir modeling of the Vendenheim geothermal site (France)}},
  journal = {Advances in Geosciences},
  month   = jan,
  year    = 2025,
  volume  = 65,
  pages   = {117--125},
  note    = {\url{https://doi.org/10.5194/adgeo-65-117-2025}}
}

% MOOSE
% "The constitutive equations have been implemented as a material model in ... MOOSE ..."
% See also: Pai_2024 with the same authors
@Article{Pai_2025,
  author  = {Namit Pai and Indradev Samajdar and Anirban Patra},
  title   = {Study of orientation-dependent residual strains during tensile and cyclic deformation of an austenitic stainless steel},
  journal = {International Journal of Plasticity},
  month   = feb,
  year    = 2025,
  volume  = 185,
  pages   = {104228 (xx pages)},
  note    = {\url{https://doi.org/10.1016/j.ijplas.2024.104228}}
}

% BISON/MARMOT
% "A mechanistic multiscale model utilizing the ... MARMOT and BISON codes was developed ..."
@Article{Hirschhorn_2025b,
  author  = {J. A. Hirschhorn and L. K. Aagesen and C. Jiang and G. L. {Beausoleil II}},
  title   = {Development and preliminary validation of a mechanistic multiscale model for fuel-cladding chemical interaction in metallic nuclear fuels},
  journal = {Nuclear Engineering and Design},
  month   = feb,
  year    = 2025,
  volume  = 432,
  pages   = {113811 (xx pages)},
  note    = {\url{https://doi.org/10.1016/j.nucengdes.2024.113811}}
}

% BISON/Griffin
% "The MOOSE MultiApp system was used to position a single TRISO particle at the center of the smeared compact ..."
@Article{Hirschhorn_2025,
  author  = {Jacob A. Hirschhorn and Mustafa K. Jaradat and Ryan T. Sweet and Paul A. Demkowicz and Paolo Balestra and Gerhard Strydom},
  title   = {{Development and demonstration of a BISON--Griffin modeling framework for the design of targeted TRISO transient experiments in the Transient Reactor Test Facility}},
  journal = {Nuclear Engineering and Design},
  month   = jan,
  year    = 2025,
  volume  = 431,
  pages   = {113720 (14 pages)},
  note    = {\url{https://doi.org/10.1016/j.nucengdes.2024.113720}}
}

% MOOSE
% "... by comparing to the MOOSE-based runs performed by INL through benchmarking comparisons."
@Article{Ghossein_2025,
  author  = {Anthony Y. Ghossein and Cole M. Mueller and John P. Mulloy and L. Dale Thomas},
  title   = {Automated control for nuclear thermal propulsion transient phases using point kinetics-based power balance modeling},
  journal = {Annals of Nuclear Energy},
  month   = apr,
  year    = 2025,
  volume  = 213,
  pages   = {111166 (xx pages)},
  note    = {\url{https://doi.org/10.1016/j.anucene.2024.111166}}
}

% MOOSE/BISON
@Article{Espersen_2025,
  author  = {Jennifer I. Espersen and Nathan A. Capps and Mackenzie J. Ridley and Sam B. Bell and Nicholas R. Brown},
  title   = {{In-situ strain behavior and BISON simulations of Zircaloy cladding subjected to temperature cycling separate-effects tests in a steam environment}},
  journal = {Journal of Nuclear Materials},
  month   = feb,
  year    = 2025,
  volume  = 605,
  pages   = {155570 (xx pages)},
  note    = {\url{https://doi.org/10.1016/j.jnucmat.2024.155570}}
}

% Likely MOOSE
% From the acknowledgements: "We would like to thank Dr. Antonio Martin Recuero for his helpful discussion and advice on the MOOSE contact mechanics module."
% Requested full-text on ResearchGate
@Article{CYuan_2025,
  author  = {Chongxi Yuan and Marisol Koslowski},
  title   = {Grain refinement in metal microparticles subjected to high impact velocities},
  journal = {Journal of the Mechanics and Physics of Solids},
  month   = mar,
  year    = 2025,
  volume  = 196,
  pages   = {106009 (xx pages)},
  note    = {\url{https://doi.org/10.1016/j.jmps.2024.106009}}
}

% MOOSE
% "In this study, all finite element computations were conducted using the MOOSE ... framework..."
% https://www.christianpeco.com/uploads/2/3/6/1/23617100/enrichedneural2024.pdf
@Article{Barai_2025,
  author  = {Shishir Barai and Feihong Liu and Manik Kumar and Christian Peco},
  title   = {Neural network-driven framework for efficient microstructural modeling of particle-enriched composites},
  journal = {Materials Today Communications},
  month   = jan,
  year    = 2025,
  volume  = 42,
  pages   = {111278 (xx pages)},
  note    = {\url{https://doi.org/10.1016/j.mtcomm.2024.111278}}
}

% MOOSE
% "The intricate simulations presented in this study are conducted using the MOOSE platform ..."
@Article{Yevugah_2025,
  author  = {Ishmael Dominic Yevugah and Xiang-Zhao Kong and Antoine B. Jacquey and Christopher P. Green and Hartmut M. Holl{\"{a}}nder and Pooneh Maghoul},
  title   = {Fully coupled hydro-mechanical-chemical continuum modeling of fluid percolation through rock salt},
  journal = {International Journal of Rock Mechanics and Mining Sciences},
  month   = feb,
  year    = 2025,
  volume  = 186,
  pages   = {105985 (15 pages)},
  note    = {\url{https://doi.org/10.1016/j.ijrmms.2024.105985}}
}

% MOOSE
% "All the required FEM objects and architecture are provided by MOOSE..."
@Article{Guin_2025b,
  author  = {Sandip Guin and Soumya Bandyopadhyay and Saswata Bhattacharyya and Rajdip Mukherjee},
  title   = {{Interplay between thermal and compositional gradients decides the microstructure during thermomigration: A phase-field study}},
  journal = {Acta Materialia},
  month   = jan,
  year    = 2025,
  volume  = 284,
  pages   = {120586 (xx pages)},
  note    = {\url{https://doi.org/10.1016/j.actamat.2024.120586}, ArXiv e-print: \url{https://arxiv.org/abs/2406.00649}}
}

% libMesh/IBAMR
% "The IB/FE scheme is implemented in the open-source IBAMR software ... leveraging several open-source computational frameworks, including ... libMesh ..."
@Article{BoWang_2025,
  author  = {Bo Wang and Liuyang Feng and Lei Xu and Hao Gao and Xiaoyu Luo and Nan Qi},
  title   = {Three-dimensional fluid-structure interaction modelling of the venous valve using immersed boundary/finite element method},
  journal = {Computers in Biology and Medicine},
  month   = feb,
  year    = 2025,
  volume  = 185,
  pages   = {109450 (10 pages)},
  note    = {\url{https://doi.org/10.1016/j.compbiomed.2024.109450}}
}

% MOOSE/BISON
% "These experiments were simulated using the BISON fuel performance code..."
@Article{Sweet_2025,
  author  = {R. T. Sweet and C. P. Massey and J. A. Hirschhorn and S. B. Bell and K. A. Kane},
  title   = {{Wrought FeCrAl alloy (C26M) cladding behavior and burst under simulated loss-of-coolant accident conditions}},
  journal = {Nuclear Engineering and Design},
  month   = jan,
  year    = 2025,
  volume  = 431,
  pages   = {113712 (10 pages)},
  note    = {\url{https://doi.org/10.1016/j.nucengdes.2024.113712}}
}

% MOOSE
% "The proposed model is employed in the MOOSE software, a finite element method (FEM) based solver ..."
% https://www.researchgate.net/publication/381373297_Effect_of_Cr_Segregation_on_Grain_Growth_in_Nanocrystalline_alpha-Fe_Alloy_A_Multiscale_Modelling_Approach
@Article{Guin_2025,
  author  = {Sandip Guin and Albert Linda and Yu-Chieh Lo and Somanth Bhowmick and Rajdip Mukherjee},
  title   = {{Effect of Cr segregation on grain growth in nanocrystalline $\alpha$-Fe alloy: A multiscale modeling approach}},
  journal = {Computational Materials Science},
  month   = jan,
  year    = 2025,
  volume  = 247,
  pages   = {113509 (xx pages)},
  note    = {\url{https://doi.org/10.1016/j.commatsci.2024.113509}, ArXiv e-print: \url{https://arxiv.org/abs/2406.08437}}
}

% MOOSE
% "The second step involves deterministic transport calculations, which are performed using Griffin, a reactor physics application based on ... (MOOSE)."
@Article{Nguyen_2025,
  author  = {Khang H. N. Nguyen and Mark D. DeHart and Joshua T. Hanophy and Yaqi Wang},
  title   = {{Development of a Griffin model of the advanced test reactor}},
  journal = {Annals of Nuclear Energy},
  month   = feb,
  year    = 2025,
  volume  = 211,
  pages   = {111012 (xx pages)},
  note    = {\url{https://doi.org/10.1016/j.anucene.2024.111012}}
}

% MOOSE/phase_field
% "We solve all the equations in their corresponding weak forms using ... 'MOOSE' ..."
@Article{Bandyopadhyay_2025,
  author  = {Soumya Bandyopadhyay and Somnath Bhowmick and Rajdip Mukherjee},
  title   = {{Grain boundary grooving in thin film under the influence of an external magnetic field: A phase-field study}},
  journal = {Computational Materials Science},
  month   = jan,
  year    = 2025,
  volume  = 246,
  pages   = {113378 (xx pages)},
  note    = {\url{https://doi.org/10.1016/j.commatsci.2024.113378}, ArXiv e-print: \url{https://arxiv.org/abs/2408.13883}}
}

% MOOSE/Achlys
% In this model, we consider macroscopic tritium transport processes ... using the Achlys software package, which is built on top of ... MOOSE"
@Article{Seelinger_2025,
  author  = {Linus Seelinger and Anne Reinarz and Mikkel B. Lykkegaard and Amal Mohammed A. Alghamdi and David Aristoff and Wolfgang Bangerth and Jean B{\'{e}}n{\'{e}}zech and Matteo Diez and Kurt Frey and John D. Jakeman and Jakob Sauer J{\o}rgensen and Ki-Tae Kim and Massimiliano Martinelli and Matthew Parno and Riccardo Pellegrini and Noemi Petra and Nicolai A. B. Riis and Katherine Rosenfeld and Andrea Serani and Lorenzo Tamellini and Umberto Villa and Tim J. Dodwell and Robert Scheichl},
  title   = {{Democratizing Uncertainty Quantification}},
  journal = {Journal of Computational Physics},
  month   = jan,
  year    = 2025,
  volume  = 521,
  pages   = {113542 (35 pages)},
  note    = {\url{https://doi.org/10.1016/j.jcp.2024.113542}, ArXiv e-print: \url{https://arxiv.org/abs/2402.13768}}
}

% MOOSE/RACCOON
% "All simulations are performed using RACCOON ... RACCOON is built on the MOOSE framework ..."
@Article{Torres_2025,
  author  = {David E. Torres and Tianchen Hu and Andrew J. Stershic and Timothy R. Shelton and John E. Dolbow},
  title   = {A variational phase-field framework for thermal softening and dynamic ductile fracture},
  journal = {Computer Methods in Applied Mechanics and Engineering},
  month   = jan,
  year    = 2025,
  volume  = {433, Part A},
  pages   = {117452 (26 pages)},
  note    = {\url{https://doi.org/10.1016/j.cma.2024.117452}}
}

% MARMOT/BISON
% "... diffusivity is ... derived using ... MARMOT and implemented in ... BISON."
@Article{Simon_2025,
  author  = {Pierre-Cl{\'{e}}ment A. Simon and Jia-Hong Ke and Chao Jiang and Larry K. Aagesen and Wen Jiang},
  title   = {{Multiscale, mechanistic modeling of irradiation-enhanced silver diffusion in TRISO particles}},
  journal = {Journal of Nuclear Materials},
  month   = jan,
  year    = 2025,
  volume  = 603,
  pages   = {155464 (xx pages)},
  note    = {\url{https://doi.org/10.1016/j.jnucmat.2024.155464}}
}

% MOOSE/FERRET
% "Specifically, the FERRET package ... based on ... (MOOSE) ... was used to conduct all the FEM-based simulations ..."
% https://www.researchgate.net/publication/382692341_Extrinsic_Dielectric_Response_due_to_Domain_Wall_Motion_in_Ferroelectric_BaTiO_3
@Article{Gurung_2025,
  author  = {Ashok Gurung and Mohammad Fatin Ishtiyaq and S. Pamir Alpay and John Mangeri and Serge Nakhmanson},
  title   = {{Extrinsic dielectric response due to domain wall motion in ferroelectric BaTiO$_3$}},
  journal = {Computational Materials Today},
  month   = mar,
  year    = 2025,
  volume  = 5,
  pages   = {100016 (7 pages)},
  note    = {\url{https://doi.org/10.1016/j.commt.2024.100016}, ArXiv e-print: \url{https://arxiv.org/abs/2407.20354}}
}

% MOOSE
% "... (MOOSE) ... was used for solving Eqs. (1), (3), (4) and (7)."
@Article{Ebrahimi_2025,
  author  = {Ebrahim Ebrahimi and Hamed Attariani},
  title   = {{Effect of stress and irradiation fluence on latent track formation in swift heavy ion irradiation: A case study on TiO$_2$}},
  journal = {Radiation Physics and Chemistry},
  month   = jan,
  year    = 2025,
  volume  = 226,
  pages   = {112278 (9 pages)},
  note    = {\url{https://doi.org/10.1016/j.radphyschem.2024.112278}}
}

% MOOSE/Griffin
@Article{YWang_2025,
  author  = {Yaqi Wang and Zachary M. Prince and Hansol Park and Olin W. Calvin and Namjae Choi and Yeon Sang Jung and Sebastian Schunert and Shikhar Kumar and Joshua T. Hanophy and Vincent M. Labour{\'{e}} and Changho Lee and Javier Ortensi and Logan H. Harbour and Jackson R. Harter},
  title   = {{Griffin: A MOOSE-based reactor physics application for multiphysics simulation of advanced nuclear reactors}},
  journal = {Annals of Nuclear Energy},
  month   = feb,
  year    = 2025,
  volume  = 211,
  pages   = {110917 (23 pages)},
  note    = {\url{https://doi.org/10.1016/j.anucene.2024.110917}}
}

% MOOSE
% "A multi-physics model including neutronics, fuel rod heat transfer, mechanics and fluid flow has been developed based on the MOOSE framework."
@Article{TianliangHu_2025,
  author  = {Tianliang Hu and Duoyu Jiang and Xinyi Zhang and Zhaohao Wang and Lipeng Wang and Lu Cao and Da Li and Lixin Chen},
  title   = {{Steady-state analysis of Xi'an Pulse Reactor based on the multi-physics coupling method}},
  journal = {Annals of Nuclear Energy},
  month   = feb,
  year    = 2025,
  volume  = 211,
  pages   = {110922 (xx pages)},
  note    = {\url{https://doi.org/10.1016/j.anucene.2024.110922}}
}

% MOOSE
% "The model is implemented in ... (MOOSE), ..."
@Article{Lin_2025,
  author  = {Albert Lin and Jongkyung Lee and Xiaoyuan Lou and Yongfeng Zhang},
  title   = {{Phase-field modeling of interdiffusion between dissimilar Fe-Cr-Ni alloys during non-isothermal hot isostatic pressing}},
  journal = {Computational Materials Science},
  month   = jan,
  year    = 2025,
  volume  = 246,
  pages   = {113357 (xx pages)},
  note    = {\url{https://doi.org/10.1016/j.commatsci.2024.113357}}
}

% MOOSE
% "The crystal plasticity modeling framework is based on our prior work [Chaudhary_2023]..."
@Article{Chaudhary_2025,
  author  = {Suketa Chaudhary and Bhargav Sudhalkar and Namit Pai and Mithun Palit and Zafir Alam and R. Sankarasubramanian and Indradev Samajdar and Anirban Patra},
  title   = {{A crystal plasticity-based micromechanical model for precipitate shearing: Application to cyclic softening of polycrystalline Ni-based superalloys}},
  journal = {International Journal of Fatigue},
  month   = jan,
  year    = 2025,
  pages   = {108582 (xx pages)},
  note    = {\url{https://doi.org/10.1016/j.ijfatigue.2024.108582}}
}
